Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04609 ATGAATCTCAATTTACAGTTCATTGCAGCATGTAAAAAACCGCCAGTGTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAGAAAGAGCCATATTCACTTTCAATAGAAACAATACTAAGGTTAGCTCTTGACATATCTAGGGGTATGGAGTACCTTCATTCACAAGGTGTGATTCACAGAGACCTCAAGTCAAATAACTTGCTTCTCAATGATGAGATGAGGGTTAAGGTGGCAGATTTTGGTACATCATGTCTTGAAACACGAAACAAGGAAACCAAAGGAAACATGGGAACATATCGTTGGATGGCACCAGAGATGATTAAGGAAAAACCTTATACTCGTAAAGTAGATGTGTATAGTTTTGGTATTGTGCTTTGGGAGCTCACAACTGCTCTACTTCCCTTCCAAGGAATGACCCCAGTGCAAGCTGCTTTTGCTGTGGCTGAGAAGAATGAAAGGCCTCCCGTGCCGGCAAGTTGTGAGGCAGCACTAGCACAATTGATAAAGCGATGTTGGTCAGCAAACCCGTCAAAGAGGCCAGATTTCAGTGATATTGTGTCTGCTTTGGAGAAGTACGATGAGTGTGTCAAGGAGGGCCTACCTCTTTCTCATCATTCATCATTAGTCACTCCAAATCTCATTATTCAACGTCTTAAAGGCTGTGTGTCCATCACCTCCTCCTCCATACCTGTACATGCCTGA 726 0.4256 MNLNLQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRNKETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPVPASCEAALAQLIKRCWSANPSKRPDFSDIVSALEKYDECVKEGLPLSHHSSLVTPNLIIQRLKGCVSITSSSIPVHA. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04609 241 ProSiteProfiles Protein kinase domain profile. 1 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04609 241 FunFam serine/threonine-protein kinase HT1 26 218 - -
Seca5g04609 241 PRINTS Tyrosine kinase catalytic domain signature 59 77 IPR001245 GO:0004672|GO:0006468
Seca5g04609 241 PRINTS Tyrosine kinase catalytic domain signature 124 146 IPR001245 GO:0004672|GO:0006468
Seca5g04609 241 PRINTS Tyrosine kinase catalytic domain signature 21 34 IPR001245 GO:0004672|GO:0006468
Seca5g04609 241 PRINTS Tyrosine kinase catalytic domain signature 168 190 IPR001245 GO:0004672|GO:0006468
Seca5g04609 241 PRINTS Tyrosine kinase catalytic domain signature 105 115 IPR001245 GO:0004672|GO:0006468
Seca5g04609 241 SUPERFAMILY Protein kinase-like (PK-like) 6 197 IPR011009 -
Seca5g04609 241 Gene3D Transferase(Phosphotransferase) domain 1 4 216 - -
Seca5g04609 241 SMART serkin_6 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04609 241 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 5 200 - -
Seca5g04609 241 PIRSF ILK 2 208 - -
Seca5g04609 241 CDD STKc_MAP3K-like 5 197 - -
Seca5g04609 241 ProSitePatterns Serine/Threonine protein kinases active-site signature. 65 77 IPR008271 GO:0004672|GO:0006468
Seca5g04609 241 Pfam Protein tyrosine and serine/threonine kinase 6 197 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04609 Seca-Chr5 103392883 103395654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04609 5 231 MAP Kinase Kinase Kinase AT1G62400 88.158 1.65e-151 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca5g04609 PK_Tyr_Ser-Thr 3e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04609 - - aprc:113845847 444.891