Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04602 ATGGAGCAGTCTAGTCAACATCTTTCCTCTAATGTAACTCAACAGCTGCCTATGCCTGTTTCTACCGGTTCTGCTCCAGCAGTAGCAGATATTGGTGGAAATCAACTAATTAACAATCCAGAAACTGTAACTGATGCTACTAGAGCTAATCCCCTCCCTCCCCTTCCAATTAATGTGAGGAAGAGGAAACCTAATGCAAGTGGTCCTCGAAGAACTTCATCTGCATGGGACCACTTCACTAAATTACCTGAAACTGAAGTGAATGATGGGTTGAATGATTTGAACCCCTCCATTGGAAACATTAGAAATACTATTAGATATGTGAGGTTTTCACCTCAAAGGCTTGCAAAATTTAAAGAGTGCATTGAGATTTCTAAAATCTCTTGCAAAAAACTGGTATGTCTTGATGTGCCCACAAGGTGGAACTCCACATACTTGATGTTAGAGATTGCTGAAATGTATCAAGCTGCATTTGAGAGGTTGTTATTTGAGGATAAAACTTTTATGGGCTGTTTTGGGACAGATTCTCCCCCTTCAAGTCGGGATTGGAAAAAAGCCAGGGCTTTCATTAAATTTCTTAAAATTTTCTATGATGCAACCAACTGTTTTTCTGCTTCTGTCCATGTCACTATACATGCTGCCTTTCATCAGTTAGCTTTGATTTACACTGAGTTGCAACAATCCTCTATGAATCTGAATTCTCTTTTTGCTAAAATGGGTATGGACATGAAAAAAAGTATGACAAATATTGGGGTAATGTGCTCAACATCAACCAACTTCTTTATTTTGGGGACTGCACAATCCGCTTCAGATCCGTTGCAAATGAGTTCACATAAGAGATCCAGCCCTTCTGAAATTGCTACTCATGTAGCTAGGACAGATGCCTTTAGACAACACTTGCAAGAGCAGAACTCAATTGACCAGAAGAATGAACTTGAGAGGTACCTTAGTGAATCATGTGTTAACGGGGGTGATACATTTAATCTGCTTGTATGGTGGAAACAGAACTTCTCTCGTTTCCCTATATTGTCAACCATGGCTAGGGATGTCCTTGTTGTTCCGGTTTCTACTGTGGCATCCGAGAGTGCATTTAGTACTGGTGGAAGGAACTTCAAGGAAGAGGTGGAGGATCTACAGTTGAACCCGGATCCTCTAGTACTGCAATGCCATCATCATCTCAGTCGCAGCCAATTATTGGCTGTGACTAGACTTGTTGTTAACACACTTTTTGCTTTTTTGGAGTCAGAAGTGGTAAATGACTCAAATTATGTTTGCAATACATGTTTTTTGCTTAAGCAAGTTGATGGTGAATCCATCAGTGATGGTCTTTTTTGGGACAGGGACAGGGACAGGTTCTACTGTTTCTGTGTTCTTGCAGCCACTCAAACACCAGGAGAGGCAGGTAAAAATTGGTTTCAGGGTACTGTTGATGTTTGGCTTACAAGTGTGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTATTGTTGTTGAAAGTTTTGATTACTTTCCTGGTAGAGGCCTTACTGCCACTGTTAACAACATTGAGGTACCTTGTTATTGCATGCATTTCTCAACCCATTACTTAAATATTCAGTTTGCTTGA 1611 0.4072 MEQSSQHLSSNVTQQLPMPVSTGSAPAVADIGGNQLINNPETVTDATRANPLPPLPINVRKRKPNASGPRRTSSAWDHFTKLPETEVNDGLNDLNPSIGNIRNTIRYVRFSPQRLAKFKECIEISKISCKKLVCLDVPTRWNSTYLMLEIAEMYQAAFERLLFEDKTFMGCFGTDSPPSSRDWKKARAFIKFLKIFYDATNCFSASVHVTIHAAFHQLALIYTELQQSSMNLNSLFAKMGMDMKKSMTNIGVMCSTSTNFFILGTAQSASDPLQMSSHKRSSPSEIATHVARTDAFRQHLQEQNSIDQKNELERYLSESCVNGGDTFNLLVWWKQNFSRFPILSTMARDVLVVPVSTVASESAFSTGGRNFKEEVEDLQLNPDPLVLQCHHHLSRSQLLAVTRLVVNTLFAFLESEVVNDSNYVCNTCFLLKQVDGESISDGLFWDRDRDRFYCFCVLAATQTPGEAGKNWFQGTVDVWLTSVAVVDHSEGKDLPSIVVESFDYFPGRGLTATVNNIEVPCYCMHFSTHYLNIQFA. 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04602 536 MobiDBLite consensus disorder prediction 1 21 - -
Seca5g04602 536 PANTHER BED FINGER-RELATED 93 373 IPR045259 -
Seca5g04602 536 Pfam hAT family C-terminal dimerisation region 311 373 IPR008906 GO:0046983
Seca5g04602 536 SUPERFAMILY Ribonuclease H-like 90 370 IPR012337 -
Seca5g04602 536 MobiDBLite consensus disorder prediction 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04602 Seca-Chr5 103314357 103317903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04602 484 518 Primary Pumps ATPases AT4G37270 82.857 1.09e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04602 - - psat:127080196 280.796