LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g04589	ATGAAGAAAGACGCCGAAGTGACACCGTTTGGCGCGTCGTCGCGGTTGCAGTTCTTCGTCCGCATGATGCCGAAGGGCAACAGCATGGTGATGCAGTGTTCGGGAGAAGATACCGTGAAATCGGTTCACGAAAGGATCGAGAAGATGATCGGCATTCCGGTTTGCCAGCAGAGGCTAATATACAAAGGGAAGCAACTCCACTGGGAGCAGAGTCTTGACGAATGCGGCATCCAAAACGACGCGAATCTTCAATTGATTGGGCACTTGCGTAGTGGTGGTTGCCCTCAAGTGTGGCGCGACATGGAAGAAATTGATTCCCTCATTTGCGGTTTATGCAGAGGCGAAGGGGCGCCCGAACCTTCGAAGATCGTCGTCGATCTCAACAAGTACGTGACCAACGTCAATGAGTACTGTGTCGTTCAGTTCTTTTATGCTTTCATGTCCTCCAACATTCCCTCGGCGTTGGTCATGCTCTATGTGTCCCCTTATGAAGGTAACAAGGACCTTGCTGATACTGTTATTAGACAATTTTTTAGCAGTTGCTGTGCTAGCTCATCTAAAGAGTTGAAGTTTCGTTCCCTTTCTATGGTGTTGGAGTTTTGTAGACTGCTTAGACATGTGGTGGAGTGTTTTGATTCTTTGTATATCGCTTGCCGTGGTTATTTCAGGATATTGTTTGAGGCTGCTGGTGATCGTTCCTTTGATATTAGGAATTTCCTTCAAGATATGTTCCCCTTTGTTTCTGAGCTTGCTGATGTGATTTTGAGGGATATGGAGTTGACTATATTTTGCCCCACCGGCATATTGACGAGGGGGAACCATGCTCAGGATTTCACAGTTTTGTTAGCCCCTTTAACGAGTGAAATGAGAAAGCGGCAAGCTTTGAGTTTGAAGGGTTCTGTGACGGATGAAAATTGCCATGAGGAGAACCCTTTGTTTGAAAGGGAGGTTGATCACCTTCGAATTATATATATCAAGTTATTGATCACAATGGATGACTTTCTTGGGGCCCTGGAGGATTGCTTGGCTGAGGAGGAAGAAGAGGGCTGTTGGGGGTGGTCTTGGTATCTTTCCATGTTGAAGGAATTGTATCATATCTCTAAGCTCTATGATGGCACCGAAGACATGTTTTGGAGAGTCTTGATGCGTCGAAGAAATATGCTGTCTCTATTAGTTGTTTGGAATGCAGAGAGAACCAATGATCATCGGTGGGTTCTTGAGAACAAAAGTGTGACCAATTTTGAATCTAGGAGGCATTTGGCAATGATACTCTTCTCTGACATGAAAAAAGATTATGGGAGGTTGCATCATATGCTTATTGACAGGTCTCAATTGTTGGCTGAATCTTTCCGGTGCATAGCAATGCCTAAATCTCTGCATGCTGGTCTGTTTGTGGAATTCAAGAATGAGGAAGCTAGAGGAGCGGGTGTACTGAGGGAGTGGTTTGTTTTGGTGTGTCAAGCAATATTTAATCCATTAAATGCTCTTTTTGAGGCATGCCCAAATGATCGCCGGAGATTTTTCCCTAATTCTGCATCTAAGGTAAATCCTCTGCACCTTCAGTACTTCAGCTTCTCTGGTCGTATTATTGCATTGGCTTTGAAGAATAAAGTACAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCATGCAATTGGCTGGAAACTGTATTACTTTAGAAGATATAAAAGAAGCAGATCCTTACTTTTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTAATTTCATTGATTCAGATGCATTAGGACTGACGTTTGCTAGAGAGGTGGAGGAATTTGGATACAGGAAAGTGATTGAGCTTTGCCCTGGTGGGAAAACTCTTGTAGTGAATAGTAAGAACAGGGAAAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAGGGTTTTTGTGATATTCTTTCAAACTCAAGTTTCCAGCAGTTCTTTCAAAGTTTAGAGCTTGAAGATCTTGATTGGATGCTGTATGGGAGTGAAAAGGCCATCTCTGTTAGAGATTGGAAGGCACATACTGAGTATATTGGCTATAAAGAGACTGATTGTCAGATATCTTGGTTTTGGAAGGTTGTTCGGAGAATGTCTGCAAAACAAAGGAAGGCGCTTCTGTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGCATTCTCATGTATGCATTTCGAGATCTCTTGAACCTGATCGTCACCTTCCCTCATCTCAGACATGCTTTTACCAGCTGTGTATTCCCCCATATTCATCTATGGGTGTCATGCAAGATTGCCTTGGAATCATTACTCAAAAACACATTGGTTGCAGTTTTGGTATTCCGTGA	2385	0.4289	MKKDAEVTPFGASSRLQFFVRMMPKGNSMVMQCSGEDTVKSVHERIEKMIGIPVCQQRLIYKGKQLHWEQSLDECGIQNDANLQLIGHLRSGGCPQVWRDMEEIDSLICGLCRGEGAPEPSKIVVDLNKYVTNVNEYCVVQFFYAFMSSNIPSALVMLYVSPYEGNKDLADTVIRQFFSSCCASSSKELKFRSLSMVLEFCRLLRHVVECFDSLYIACRGYFRILFEAAGDRSFDIRNFLQDMFPFVSELADVILRDMELTIFCPTGILTRGNHAQDFTVLLAPLTSEMRKRQALSLKGSVTDENCHEENPLFEREVDHLRIIYIKLLITMDDFLGALEDCLAEEEEEGCWGWSWYLSMLKELYHISKLYDGTEDMFWRVLMRRRNMLSLLVVWNAERTNDHRWVLENKSVTNFESRRHLAMILFSDMKKDYGRLHHMLIDRSQLLAESFRCIAMPKSLHAGLFVEFKNEEARGAGVLREWFVLVCQAIFNPLNALFEACPNDRRRFFPNSASKVNPLHLQYFSFSGRIIALALKNKVQVGIVFDRVFFMQLAGNCITLEDIKEADPYFYSSCKQILEMDANFIDSDALGLTFAREVEEFGYRKVIELCPGGKTLVVNSKNREKYVDLLIQNRFVTSISEQVSHFAKGFCDILSNSSFQQFFQSLELEDLDWMLYGSEKAISVRDWKAHTEYIGYKETDCQISWFWKVVRRMSAKQRKALLFFWTSVKYLPVEGFRGLHSHVCISRSLEPDRHLPSSQTCFYQLCIPPYSSMGVMQDCLGIITQKHIGCSFGIP.	795

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g04589	794	Gene3D	Hect, E3 ligase catalytic domain	677	792	-	-
	Seca5g04589	794	SUPERFAMILY	Ubiquitin-like	13	93	IPR029071	-
	Seca5g04589	794	ProSiteProfiles	HECT domain profile.	455	794	IPR000569	GO:0004842
	Seca5g04589	794	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	555	637	-	-
	Seca5g04589	794	Pfam	HECT-domain (ubiquitin-transferase)	484	781	IPR000569	GO:0004842
	Seca5g04589	794	SMART	ubq_7	16	88	IPR000626	GO:0005515
	Seca5g04589	794	Pfam	Ubiquitin family	19	89	IPR000626	GO:0005515
	Seca5g04589	794	Gene3D	-	11	104	-	-
	Seca5g04589	794	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	17	792	-	-
	Seca5g04589	794	Gene3D	Hect, E3 ligase catalytic domains	439	669	-	-
	Seca5g04589	794	SMART	hect_3	453	792	IPR000569	GO:0004842
	Seca5g04589	794	SUPERFAMILY	Hect, E3 ligase catalytic domain	421	779	IPR035983	GO:0004842
	Seca5g04589	794	PRINTS	Ubiquitin signature	27	47	IPR019956	-
	Seca5g04589	794	PRINTS	Ubiquitin signature	48	68	IPR019956	-
	Seca5g04589	794	PRINTS	Ubiquitin signature	69	90	IPR019956	-
	Seca5g04589	794	Gene3D	Hect, E3 ligase catalytic domain	555	637	-	-
	Seca5g04589	794	ProSiteProfiles	Ubiquitin domain profile.	16	92	IPR000626	GO:0005515
	Seca5g04589	794	FunFam	E3 ubiquitin-protein ligase UPL5	678	793	-	-
	Seca5g04589	794	CDD	HECTc	436	792	IPR000569	GO:0004842

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g04589	Seca-Chr5	103210281	103214880	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g04589	16	92	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	36.364	6.41e-10	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g04589	-		-	gmx:100796470	925.235