LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g04588	ATGATGCCGAAGGGCAACAGCGTGGTGATGCAGTGTTCGGGAGAAGAGACCGTGGAATCGGTTCACGAAAGAATCGAGAGGATGACCGGAATTCCGGTTCGCGAGCAGAGGCTAATATACGAAGGGAAGCAGCTCCGTTGGGAGCAGAGTCTGCGCGAGTGCGGCATTCAAAAAGACGCGAATCTCCAATTGGTTGGGCACTTACGCAGTGGGGAGCACCCACCTTCATGTTCATGGCATGATGACGCTAACCTTCATAGATTTCTTCAGTTATTGAGCAAAACGGATAAGTGCCTTCATACCTTGGAGAATTGCTTTGCTAACAAGGAGCCTTGGGAAGGGGATGAGGATGTTGCCAATACGTGTTCGATGTTACTTTTCATCCTGAAGGATTTGCATGAAATCTCTAAGCACTATGATGGCGCAGAAGACAAGTTTTGGAGTGTTTTGATGCATCGAAGAAGTTTGCTGTCTTTATTAATTGTTCGGTTTGCAAAGAGAACAGATGATAATCAATGGGTTTTTGAGAAAAAATGTGTGACCGATTTTGAATGTAGGAGGCATTTGGCGATGATGCTCTTCCCTGATGTAGAAGAAGACTTTGAGGATTTGCATGAGATGCTTATTGATAGGTCTCAGTTGTTGGCTGAATCTTTCGAGTACATAGCAGAAGCGGAGCCTGAATCTCTGCACACTGGTCTTTTTATTAAATTCAAGAATGAGGATGCTTCAGGACCGGGTGTACTGAGGGAGTGGTTTTTTTTGGTGTGTCAAGCATTATTTAATCCGCTAAATGCTCTTTTTGAGGCATGCCCAAATGACCGCAGGAGATTTTTCCCCAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCTGTGGTCGTATTATTGCATTGGCTTTGATGAATAAGGTGCAAGTGGGTATTGCTTTTGATCGTGTGTTTTTCATGCAATTGGCTGGAAACTGTATTACTTTGGAAGACATACAAGATGCAGATCCTTACTTGTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTAATTTCATTGATTCAGATGCATTAGGACTGACGTTTGCTAGAGAGGTGGAGGAATTTGGACACATGAAAGTGATTGAGCTTTGCCCTGGTGGGAAAACTCTTGTAGTGAATAGTAAGAACAGGGAAAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAGGGTTTCTGTGATATTCTTTCAAACTCAAGTCTCCAGCAGTTCTTTCAAAATTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAGAAGGCCATCTCTGTTAAAGATTGGAGGGCACATACTGAGTATATTGGCTATAAAGAGACTGATCGTCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCAGAACAAAGGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCCATGGTTTGGCTTCCCGTCTTTTCATTTCCAGATCTGCAGAACCTGATGATCGCCTGCCCTCATCTCACACATGCTTTTACAGACTGTGTTTCCCTCCGTATTCATCTAAGGCTGTTATGCAAGATCGTCTTGGAGTCATCACTCATGAACACATTGGTTGCAGTTTTGGGACTTGTTGA	1698	0.4299	MMPKGNSVVMQCSGEETVESVHERIERMTGIPVREQRLIYEGKQLRWEQSLRECGIQKDANLQLVGHLRSGEHPPSCSWHDDANLHRFLQLLSKTDKCLHTLENCFANKEPWEGDEDVANTCSMLLFILKDLHEISKHYDGAEDKFWSVLMHRRSLLSLLIVRFAKRTDDNQWVFEKKCVTDFECRRHLAMMLFPDVEEDFEDLHEMLIDRSQLLAESFEYIAEAEPESLHTGLFIKFKNEDASGPGVLREWFFLVCQALFNPLNALFEACPNDRRRFFPNPASKVHPLHLEYFSFCGRIIALALMNKVQVGIAFDRVFFMQLAGNCITLEDIQDADPYLYSSCKQILEMDANFIDSDALGLTFAREVEEFGHMKVIELCPGGKTLVVNSKNREKYVDLLIQNRFVTSISEQVSHFAKGFCDILSNSSLQQFFQNLELEDLDWMLHGSEKAISVKDWRAHTEYIGYKETDRQISWFWEIVGRMSAEQRKVLLFFWTSVKYLPVEGFHGLASRLFISRSAEPDDRLPSSHTCFYRLCFPPYSSKAVMQDRLGVITHEHIGCSFGTC.	566

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g04588	565	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	122	563	-	-
	Seca5g04588	565	PRINTS	Ubiquitin signature	27	47	IPR019956	-
	Seca5g04588	565	PRINTS	Ubiquitin signature	6	26	IPR019956	-
	Seca5g04588	565	PRINTS	Ubiquitin signature	48	69	IPR019956	-
	Seca5g04588	565	FunFam	E3 ubiquitin-protein ligase UPL5	449	564	-	-
	Seca5g04588	565	SMART	hect_3	224	563	IPR000569	GO:0004842
	Seca5g04588	565	Pfam	HECT-domain (ubiquitin-transferase)	255	556	IPR000569	GO:0004842
	Seca5g04588	565	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	326	408	-	-
	Seca5g04588	565	Gene3D	Hect, E3 ligase catalytic domains	208	440	-	-
	Seca5g04588	565	Gene3D	Hect, E3 ligase catalytic domain	326	408	-	-
	Seca5g04588	565	CDD	HECTc	205	563	IPR000569	GO:0004842
	Seca5g04588	565	Gene3D	-	1	73	-	-
	Seca5g04588	565	Gene3D	Hect, E3 ligase catalytic domain	448	564	-	-
	Seca5g04588	565	SUPERFAMILY	Ubiquitin-like	3	71	IPR029071	-
	Seca5g04588	565	SUPERFAMILY	Hect, E3 ligase catalytic domain	201	550	IPR035983	GO:0004842
	Seca5g04588	565	Pfam	Ubiquitin family	4	69	IPR000626	GO:0005515
	Seca5g04588	565	ProSiteProfiles	HECT domain profile.	226	565	IPR000569	GO:0004842
	Seca5g04588	565	SMART	ubq_7	2	67	IPR000626	GO:0005515
	Seca5g04588	565	ProSiteProfiles	Ubiquitin domain profile.	1	71	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g04588	Seca-Chr5	103203238	103207710	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g04588	5	76	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	37.500	3.83e-10	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g04588	-		-	gmx:100789233	755.747