Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04576 ATGGTTTCGCTGGAGGATTCTCGCTCGAATTCGAGCCGTTTCCCCTTAACGCGAACCTATCAGTATCAGTCCTCCCTTTCCTCCAAAACGCAGCGTCGCATCGGAAGGTCCATGCGCACTATACGCTCCAATTTCTTCCAAGATGACAACAGCAGTACCTGCTCCTTCACCGAGAAATCCACGTGTCTATCGGAAAACCTTACCGACTCCGTCGTCGACCTCCGCCTCGTCGACCTCGCTTCCCGGAACAATAAATCCGTCAAGTCCTCCGGCGCCTCCGAGGAGGACCTCCTCGATCTCTCCCAGGCCTTCAGCGATTTCTCCGCCTGCAGCAGCGACATCTCCGGCGAGCTGCAGCGTCTGGCGAGCCTGCCTTCGCCGGAATACGTTCAGAAGAGTGACGCTGGCGGAGAGGCCGAGAAGGAGCCCGAGCCAGAGCCTTGCATGGGGTTCCTCCAGAGGGAGAACTTCTCCACGGAGATTATTGAGAGTATCTCGCCGGAGGATCTTCAGCCGACGGTGAAGCTTTGCATTGACGGGCTTCAGTCGCCGTCGGTGGCCGTGAAGCGATCGGCTGCGGCGAAGCTGAGGCTTCTGGCGAAGAATCGCGCTGATAACAGAGTTCTGATCGGCGAGTCCGGTGCGGTTGCTGTTCTGGTTCCTCTGCTTCGGTGCAGCGATCCGTGGACGCAGGAGCACGCAGTGACGGCGCTGCTGAACCTGTCACTTCACGAAGACAACAAGAAGCTCATAACCAATGCCGGAGCCGTGAAGTCGCTGATTTATGTGCTGAAGACAGGGACGGAGACTTCGAAGCAGAACGCGGCGTGCGCGTTGCTGAGCCTTGCGTTGGTGGAAGAGAACAAGAGCTCGATCGGCGCTTCGGGGGCGATACCACCACTAGTTTCTCTGCTGTTGAATGGTTCCAACAGGGGGAAGAAGGACGCGCTGACGACGCTCTATAAGCTGTGCTCCGTGAAGCAGAACAAAGAGAGGGCGGTGAGCGCCGGTGCTGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGCAAGGGAACGGCATGGCGGAGAAGGCAATGGTAGTGCTCAACAGCTTAGCAGGGATTCAGGAAGGGAAAGATGCGATTGTGGAAGAAGGTGGAATAGCTGCTCTTGTGGAAGCCATTGAGGATGGTTCTGTGAAGGGAAAGGAGTTTGCTGTTTTGACGCTTCTGCAACTGTGTGCTGACAGTGTCAGAAACAGAGGGTTTCTCGTGAGAGAGGGTGGGATTCCTCCTCTTGTTGCTCTTTCCCAAACTGGGACTCCTCGAGCTAAGCACAAGGCTGAAACGCTACTTCGATATTTGAGAGAATCAAGACAAGAAGCATCTTCATCAAGTTCTTAG 1380 0.5601 MVSLEDSRSNSSRFPLTRTYQYQSSLSSKTQRRIGRSMRTIRSNFFQDDNSSTCSFTEKSTCLSENLTDSVVDLRLVDLASRNNKSVKSSGASEEDLLDLSQAFSDFSACSSDISGELQRLASLPSPEYVQKSDAGGEAEKEPEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSPSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVAVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGAVKPLVELVAEQGNGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADSVRNRGFLVREGGIPPLVALSQTGTPRAKHKAETLLRYLRESRQEASSSSS. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04576 459 MobiDBLite consensus disorder prediction 125 147 - -
Seca5g04576 459 Gene3D - 268 458 IPR011989 -
Seca5g04576 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 337 379 IPR000225 GO:0005515
Seca5g04576 459 SUPERFAMILY ARM repeat 171 448 IPR016024 -
Seca5g04576 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 338 IPR000225 GO:0005515
Seca5g04576 459 FunFam U-box domain-containing protein 4 313 454 - -
Seca5g04576 459 Gene3D - 159 267 IPR011989 -
Seca5g04576 459 PANTHER U BOX DOMAIN-CONTAINING 115 448 - -
Seca5g04576 459 SMART arm_5 326 366 IPR000225 GO:0005515
Seca5g04576 459 SMART arm_5 367 407 IPR000225 GO:0005515
Seca5g04576 459 SMART arm_5 244 284 IPR000225 GO:0005515
Seca5g04576 459 SMART arm_5 409 449 IPR000225 GO:0005515
Seca5g04576 459 SMART arm_5 285 325 IPR000225 GO:0005515
Seca5g04576 459 SMART arm_5 203 243 IPR000225 GO:0005515
Seca5g04576 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 214 256 IPR000225 GO:0005515
Seca5g04576 459 FunFam U-box domain-containing protein 4 160 312 - -
Seca5g04576 459 Pfam Armadillo/beta-catenin-like repeat 287 325 IPR000225 GO:0005515
Seca5g04576 459 Pfam Armadillo/beta-catenin-like repeat 205 242 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04576 Seca-Chr5 103073195 103076809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04576 151 452 U-box Gene Family AT2G23140 49.032 4.35e-87 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04576 - - gmx:100818658 754.207