Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04572 ATGCAGGTTGAAGCAAAAAAGGCTGTCCCTAGAGATGATCAGAATGTTCTGAATAGAAGCAACAGTAGCAGTCACGGGTCGCCTGGTCCTACTGCTACTCCTACCCGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCCACAGTTACTGAGAGTGATTTTAAGAAGTACTTTGATCAATTTGGAACAATTACGGATGTCGTTGTGATGTATGACCATAACACCCAAAGGCCTAGAGGTTTTGGATTCATCACATTTGATTCTGAGGAAGGAGTTGAGAAAGTGCTGCACAAAACTTTTCATGAACTAAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATTATCTCCAGGTCCAAATAGAGGCCAGTTAGGTGGATATAGTTATGGTATGAGTAGAGTTAGTAGCTTTCCTAATGGTTGCATTCAGGGATATAATCCAAGCTTGGTTGGAGGTCATGGACTTAGAATAGATGGTAGATTGAGTCCTGTTTCTGTTGGCCGTAGTGGATATCCTCTTTTGGGTCCTAGTTACGGGACAGAACTCAACTTTGAGCCACCATTGAGCCAAAATGAAAATGCAAACTTTACATCTAACTTTGTCATAGGACGGGCATTGAACTCTTCATACAGTGGAAGTCCAAGCAGGTACAGTAATGGTATGGGGTATGTTGGTTCAAGTGTTGGCAACAATTCAACCATAAGTTCAACAAATCAGAATTTGTGGGGGAATGGGTATCTTAACTATGCTACTAACTCTGCAAGCTCTGATGCATTTGTAGGTTATGGAAGTGAAAATTCAAACATGGGTTCTTTTGGTAGTATTGGATCACTTTGGAGTTCCTCCCTTGGCTCTAATCCAGCTGGAACTATAGGCTCTGGATATAGTAAGGGCAGTCTTAGTTATAGGTCTGGAGATGTGAATTTAGGGTCAAAGACAGTAGGTTATGGAAAAAGCAGTGAAAGCATTGTTGCATCAGCTTCATCATATGGTTTGTCAAATGGCAGTTATGATGAGGCATACAAAGATACTTACAAAGCTGGGTCATTTTATCAGGACAATACTTGGAGATCATCAGCTTCAGAACTAGATGATTCTGCCTCTCTTGGTTTTGGCTTTGAAAATGCTGTTTCAGATTTAATGAGCAAAAGCACTGGTGGCCACATTGGAGCTTATACTGCTGCTAATAGACAACCAAATAGAGGTGAATTGCTGCCTAGGAAGGTTATGCCGTGGATGCTCTGA 1254 0.4139 MQVEAKKAVPRDDQNVLNRSNSSSHGSPGPTATPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLHKTFHELNGKMVEVKRAVPKELSPGPNRGQLGGYSYGMSRVSSFPNGCIQGYNPSLVGGHGLRIDGRLSPVSVGRSGYPLLGPSYGTELNFEPPLSQNENANFTSNFVIGRALNSSYSGSPSRYSNGMGYVGSSVGNNSTISSTNQNLWGNGYLNYATNSASSDAFVGYGSENSNMGSFGSIGSLWSSSLGSNPAGTIGSGYSKGSLSYRSGDVNLGSKTVGYGKSSESIVASASSYGLSNGSYDEAYKDTYKAGSFYQDNTWRSSASELDDSASLGFGFENAVSDLMSKSTGGHIGAYTAANRQPNRGELLPRKVMPWML. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04572 417 Gene3D - 35 122 IPR012677 -
Seca5g04572 417 MobiDBLite consensus disorder prediction 1 37 - -
Seca5g04572 417 FunFam Heterogeneous nuclear ribonucleoprotein 1 35 122 - -
Seca5g04572 417 SUPERFAMILY RNA-binding domain, RBD 30 136 IPR035979 GO:0003676
Seca5g04572 417 CDD RRM2_Hrp1p 39 116 - -
Seca5g04572 417 SMART rrm1_1 39 111 IPR000504 GO:0003723
Seca5g04572 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 98 IPR000504 GO:0003723
Seca5g04572 417 MobiDBLite consensus disorder prediction 14 34 - -
Seca5g04572 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Seca5g04572 417 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04572 Seca-Chr5 103060570 103064823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04572 40 117 Eukaryotic Initiation Factors Gene Family AT2G36660 39.506 2.32e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04572 K14411 - cave:132171089 499.975