Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04566 ATGCAAACGTCCCAGAAACACCCCACTTCAGCTGGTATCCATTTGTACCACCAGCAGCCTATGCAAGACATTGATCCCTACACTCAATACCAAATATTACAAAGCAGTGCATGTCATGACAGTAGCAGCCAGGGAACCAATGTTTCTTTTGAAGCCTGCAAGGAGCAATACTTCACCCTGGAATCATCCACAGGAACCACTGGTCTAGGTTGTGATTCTCCTTCCTATGCTAGTGTATCATCCAACAGAGGTCCTTTTTCTCCACAAGCTTCTCATTCTTACCATTCAGATCAGCATCAGTCATCTGATAACACCTATGGATCACCAATAAGTGTACACTCTAGTGCTGATGATAGCTATGAGTTGAAGCACAAACTTAGAGAACTTGAGATTTCATTGTTAGGGCCTGAGTCAGATATAGTTGACAGCTGCAACGGCTGCATCAAGGGTGGCCTCCACGGAGCATCTTCAACAGCTAAATATAATTGGTCTCAGATTGAAGAAATGATTCCAAAGTTGGACTTGAGAGAAGTCCTCATTCGGTGTGCACAAGCTGTGTCAGATGGTGATGTTCAAACAGCACTAGGATGGATGGATAATATATTGGGAAAGATGGTATCAGTTGCTGGGGATCCTATCCAAAGGTTAGGTGCTTACATGTTGGAGGGTCTAAGAGCAAGGTTGGAATCATCAGGGAGTTTAATCTACAAGGCCTTGAAGTGTGAACAACCAACAAGCAAAGAACTCATGAGTTACATGCACATCATGTATCAGGTTTGCCCATATTGGAAGTTTGCTTATGTGTCTGCAAATGCTGTCATTGGAGAAGCAATGCAAAATGAATCCAGAATTCATATTATAGACTTCCAAATTGCACAGGGCACACAGTGGATGTTACTTATGCAGGCTCTTGCATGTAGACCAGGTGGACCTCCATTCATTCGTGTAACTGGTGTTGATGATTCCCAATCATTTCATGCTAGGGGTGGAGGACTTCATATTGTAGGAAAAAGGCTCTCAGACTATGCCAAGTCTTGTGGGGTGCCATTTGAGTTCCACATTGCTGGCATGTCTGGCTGTGAGGTTGAACTAGAAAACCTTGTAGTTATGCCAGGGGAAGCTCTAGCTGTGAATTTCCCTTTCATTTTGCACCACATGCCAGATGAGAGTGTGAGCACAGAGAACCATAGAGACAGGCTATTGAGATTGGTAAAGAGTTTGTCACCCAAGGTTGTGACCCTTGTTGAGCAAGAATCCAATACCAACACCTCACCATTTTTCCAAAGGTTTGTTGAGACCTTGGATTACTACACTGCTATGTTTGAATCAATAGATGTGGCAGTCCCCAGAGATGACAAGAAGAGGATTAGTGCAGAACAGAACTGTGTGGCTCGGGACATTGTCAACATGATAGCTTGTGAAGGGGCTGAGAGAGTGGAAAGGCATGAACTTTTTGGAAAATGGAGGTCAAGATTTTTAATGGCTGGTTTTGTACCATGCCCTTTGAGTTCTTCAGTGATGGGTTCAGTTAGGAATCTCTTGAAAGAATTCAATGAAAATTATAGGGTTGAACACACAGATGTTGCTCTCTATCTAGGTTGGAAGAACAGGGCTATGTGCACCTATTCTGCCTGGAGATGTTACTGA 1647 0.4353 MQTSQKHPTSAGIHLYHQQPMQDIDPYTQYQILQSSACHDSSSQGTNVSFEACKEQYFTLESSTGTTGLGCDSPSYASVSSNRGPFSPQASHSYHSDQHQSSDNTYGSPISVHSSADDSYELKHKLRELEISLLGPESDIVDSCNGCIKGGLHGASSTAKYNWSQIEEMIPKLDLREVLIRCAQAVSDGDVQTALGWMDNILGKMVSVAGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPTSKELMSYMHIMYQVCPYWKFAYVSANAVIGEAMQNESRIHIIDFQIAQGTQWMLLMQALACRPGGPPFIRVTGVDDSQSFHARGGGLHIVGKRLSDYAKSCGVPFEFHIAGMSGCEVELENLVVMPGEALAVNFPFILHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLDYYTAMFESIDVAVPRDDKKRISAEQNCVARDIVNMIACEGAERVERHELFGKWRSRFLMAGFVPCPLSSSVMGSVRNLLKEFNENYRVEHTDVALYLGWKNRAMCTYSAWRCY. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04566 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 113 545 IPR005202 -
Seca5g04566 548 Pfam GRAS domain family 175 546 IPR005202 -
Seca5g04566 548 MobiDBLite consensus disorder prediction 78 113 - -
Seca5g04566 548 ProSiteProfiles GRAS family profile. 166 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04566 Seca-Chr5 103034206 103035852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04566 1 546 GRAS Transcription Factor Family AT4G17230 58.394 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca5g04566 GRAS 7.4e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04566 - - gmx:100819190 928.317