Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04559 ATGCAGTCAAATGCTATGCTGATTTTGCTCCATGATGCTCAATTAAGTGTTTGTTTGTTTTCCCCCAATATTTTTCTCTACTTAATTTCTGGTCTGTGTAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAAAATTCAGAATCTGGAGCAGCAGGTCAAGGATCAAGTGAAGGGAAAAGGGCTTTGTATCACTGCAATTATTGTAATAAAGATATTACAGGAAAAATCCGTATTAAGTGTGCCGTATGCCCAGATTTTGACTTATGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCCCATAAAAGCAATCACCCGTATAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCGGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTTGCTGAGCACGTAGGGACAAAAAACAAAGAATCATGCATAGAACACTATAGGAATGTATACTTGAACTCCCCATTCTTTCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCTAAAGGGCAGGGTGAGGACAAGAAAGGAATTTCCATGGGGGATCATAGTTTAAAGGAAGACTCTCCTTTCTCTCCATCTAGAGTCAAAGTTGAAGATTCCCATAAAGCTGGTTCCGCTAGCCGTTTGACTTCTAATTTGAATTCAGAGTCAGATTCTGGCCCCTCAGGTAACAAACATGCTGCAGCTGGTGCTAACCAGAAGGCATCCAATGCAGGCCGGGGAAAAGGTGGTCCTGGAGTCATTAAAATGGAAGATCCTCAACTAGACAGAGATTTTGGAGGAAAGAAGCCGGATAACTCAGGAAATGAAGGTCCTTCTCTAGTAGAAGCCAGTGGTTATAACCCAAAAAGGCAAGAATTTGATCCTGAATATGATAATGATGCTGAACAATTACTTGCTGAGATGGAATTCAAGGACACTGACACTGAGGATGAGCGAGAGCTGAAACTACGTGTCTTGCGTTACTATTCAAAAAGGCTTGATGAAAGAAAGCGTAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAGAAGACAATATGTCGGAAATATGACTTATTCATGCGCTTTCACACTAAGGAAGAGCACGAGGAATTGCTTAGAACAGTTATCTCCCAACATAGAACTCTAAAAAGACTTCAAGAGCTTAAGGAAGCCCGGGCTGCTGGATGCCGCAATTCAGCTGAAGCAGAAAGATATCTGGTACATAAGAGAAAAAGGGAGGCTGAAGAAAGTGCTCGCAGGGTAAAAGAATGTGTTCAGGTTGGTCCAAGCAATCATGGGGTTCCAAATGCATTAATGTCTCCAGACTCTGCTGGCAAGGATTTGAGTGGAAGACCTGCAGGGCCTGCTACTTCAAGCTCTGTCAATGAAATGGATGTAACAGGATACTATGGAGCAGATTTACTCTCTGAACCTGAGAAACGTTTATGCTGTGAGCTAAGGTTGCCTCCAGCCATGTATCTAAAGATGCAACAAGAACTGTCTCTACAAATTCTTGCTGGCACTGTCTCTGCAAAATCAGATGCTCATCAGTTATTCAAGATAGATACCATCAAGATTGACAGGGTGTATGATATGCTCATCAAAAAGGGAATTGCTTCACCCTGA 1725 0.4191 MQSNAMLILLHDAQLSVCLFSPNIFLYLISGLCRSRRKKNAASGENSESGAAGQGSSEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYRNVYLNSPFFPLPDMSHVVGKNRKELLAMAKGQGEDKKGISMGDHSLKEDSPFSPSRVKVEDSHKAGSASRLTSNLNSESDSGPSGNKHAAAGANQKASNAGRGKGGPGVIKMEDPQLDRDFGGKKPDNSGNEGPSLVEASGYNPKRQEFDPEYDNDAEQLLAEMEFKDTDTEDERELKLRVLRYYSKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKTICRKYDLFMRFHTKEEHEELLRTVISQHRTLKRLQELKEARAAGCRNSAEAERYLVHKRKREAEESARRVKECVQVGPSNHGVPNALMSPDSAGKDLSGRPAGPATSSSVNEMDVTGYYGADLLSEPEKRLCCELRLPPAMYLKMQQELSLQILAGTVSAKSDAHQLFKIDTIKIDRVYDMLIKKGIASP. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04559 574 ProSiteProfiles Myb-like domain profile. 124 167 IPR001005 -
Seca5g04559 574 ProSiteProfiles SWIRM domain profile. 488 574 IPR007526 GO:0005515
Seca5g04559 574 CDD SANT 124 166 IPR001005 -
Seca5g04559 574 ProSitePatterns Zinc finger ZZ-type signature. 66 93 IPR000433 GO:0008270
Seca5g04559 574 Gene3D - 55 112 IPR043145 -
Seca5g04559 574 SMART sant 120 169 IPR001005 -
Seca5g04559 574 MobiDBLite consensus disorder prediction 463 495 - -
Seca5g04559 574 MobiDBLite consensus disorder prediction 194 229 - -
Seca5g04559 574 SMART zz_5 60 105 IPR000433 GO:0008270
Seca5g04559 574 CDD ZZ_ADA2 64 112 IPR041983 -
Seca5g04559 574 MobiDBLite consensus disorder prediction 230 248 - -
Seca5g04559 574 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 64 569 - -
Seca5g04559 574 SUPERFAMILY RING/U-box 64 126 - -
Seca5g04559 574 FunFam Transcriptional adapter 57 112 - -
Seca5g04559 574 MobiDBLite consensus disorder prediction 194 313 - -
Seca5g04559 574 ProSiteProfiles SANT domain profile. 119 171 IPR017884 -
Seca5g04559 574 ProSiteProfiles Zinc finger ZZ-type profile. 61 117 IPR000433 GO:0008270
Seca5g04559 574 Pfam Myb-like DNA-binding domain 123 166 IPR001005 -
Seca5g04559 574 FunFam Transcriptional adapter 2 489 573 - -
Seca5g04559 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 171 IPR017930 -
Seca5g04559 574 Gene3D - 489 573 IPR036388 -
Seca5g04559 574 SUPERFAMILY Homeodomain-like 117 170 IPR009057 -
Seca5g04559 574 PIRSF Txn_adaptor_ADA2 51 574 IPR016827 GO:0003713|GO:0006357|GO:0035065
Seca5g04559 574 FunFam Transcriptional adapter 2 117 169 - -
Seca5g04559 574 Pfam Zinc finger, ZZ type 63 104 IPR000433 GO:0008270
Seca5g04559 574 Gene3D - 118 169 - -
Seca5g04559 574 SUPERFAMILY Homeodomain-like 482 571 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04559 Seca-Chr5 102968408 102973882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04559 34 572 EF-hand Containing Proteins AT3G07740 46.714 1.09e-157 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g04559 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04559 K11314 - gmx:100811887 967.222