Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04555 ATGGCGTCCATACCTTCGAAAAACCTATGGATTCGGAGGCAACAATGCCCTTGTGGAGATTGGAAATGTTATATTACATATGAAGGTGATGCTGAGGAGGGTTCTGCAGCATCAGAATTGGTGAAGGCAGAGAAAACATCACCTGCAGCTATGATTACCCCTTATGTTGGAATGGTGTTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGGTTCTCTATTAGGAAAGAAAGATCAAGAATTAGCCCTCAATTAGGCATTTACAAGCGTGACTTTGTTTGTTATCGGTCTGGGTTTGCCCCTGTGAAGAAGAAGCCTAATGGAGAACACCATAGAGATAGGAAATCAGTGAGGTGTGGATGTGATGCAAAAATGTATCTGTCCAAGGAGGTTGTGGAAGGGGTTTCACAATGGTTTGTTGTGCAGTTTAGTAATGTACACAATCATGAACTTTTAGAAGATGATCAAGTGCGCCTTCTACCTGCATATCGTAAAATTCATGAAGCTGATCAAGAACGAATACTATTGCTTTCCAAAGCTGGGTTTCCAATACATAGGATAGTGAAAATGCTTGAGCTGGAAAAGGGGACTCAAGGTGGGCAACTCCCTTTCTTAGAAAGGGATGTGAGGAACTTTGTTCAAAACCGCAAAAAGGTTGTTCAAGAAAATGAGGCATTGCTCAGTGAGAAAAGAGAAAATGATATATTGGAACTTCTTGAGGCATGCAAAGCTATGAAAGAAGCTGATGATGACTTTGTTTATGACTTTACAGTGGATGAGAATGATAAGGTTGAAAATATAGCTTGGTCATATGGTGATTCTGTTAATGCTAATGCTATGTTTGGTGATGTAGTTTACTTTGACACTACTTATCGATCAATCACTTATGGATTGATTTTTGGAGCATGGTTTGGTATTGATAGCTATGGTAGAACCATATTTTTTGGTTGTGTTTTATTGCAGGATGAAACACCCCAATCCTTCTCATGGGCACTACAGACTTTTCTCCGGTTCATGAGAGGAAGATGTCCACAAACAATTCTATCTGATCTAGACCCCGGGCTTAGAGATTCCATTAGAAGTGAACTTCCAGGAACTAAACATGTCATTCCTCTGTGGAATATTCTAAACAAGGTACCCAGCTGGTTTTCTCTACCTCTTGGATCTCGCTATGCAGAATTTAAATCCGAGTTTGATGCCTTATGTCACATTGAGAATACAGAGGAATTTGAACTTCAATGGAGCCAAATGATTTCTGTGTTTGGACTTGATTCAGATAAACATACTGATTTACTGTATTCTGTTCGAGCATCCTGGGCACAATCCTATGTGAGAGGTTACTTTTTGGCTCAAATGGCAACAATAGCTTACTCAAAGTCTATAGATGCATTTTTGAAAGGGATTTTCACTGAACATACATGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATTTCTGCAAATTTTCAGCATCAATTACATCATGAGACTCAATATATACATCTTAAAACTTGCATGCCCATTGAAGAGCATGCTCGGAGTATTCTCACACCTTTTGCTTTTAGTGCTTTGCAGCAGGAATTATTTCTAGTAATGCAATATGCTACATCTGAAATGGCCAATGGATCATATATTATAAGGCATTTCAAAAGGATGGATGGAGAACGGCTTGTAATATGGTTGGCTGAAGATGAACAGATACACTGCTCTTGCAAGGAATTTGAATCCTCAGGAATATTATGCAGACATGCTCTCCGTGTATTTGTAATAAAGAATTACTTTCAGATTCCTGACAAATACTATATAAGTAGATGGAGACGGGAATGCCCTTTACTTGTTGAAGATGATCATAATAATCAAAGTGTTGGTGGGGAATGGTTTCAAGAATATCAGTCCCTAGCTGAAACTTTATTTTCAGAATCATCAATTACAAAGGAGCGATCTGACTATGCTCGCAAAGAACTGACAAAAGAACTTACTAGGATTCTTAATGAGGTTAGAAACCTGCCTGAGCCTGAGACTGATGGAGTTCTTATGAACATTAGTGTTTCACCAACCAGCTAG 2082 0.3886 MASIPSKNLWIRRQQCPCGDWKCYITYEGDAEEGSAASELVKAEKTSPAAMITPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGTQGGQLPFLERDVRNFVQNRKKVVQENEALLSEKRENDILELLEACKAMKEADDDFVYDFTVDENDKVENIAWSYGDSVNANAMFGDVVYFDTTYRSITYGLIFGAWFGIDSYGRTIFFGCVLLQDETPQSFSWALQTFLRFMRGRCPQTILSDLDPGLRDSIRSELPGTKHVIPLWNILNKVPSWFSLPLGSRYAEFKSEFDALCHIENTEEFELQWSQMISVFGLDSDKHTDLLYSVRASWAQSYVRGYFLAQMATIAYSKSIDAFLKGIFTEHTCLRSFFEQVGISANFQHQLHHETQYIHLKTCMPIEEHARSILTPFAFSALQQELFLVMQYATSEMANGSYIIRHFKRMDGERLVIWLAEDEQIHCSCKEFESSGILCRHALRVFVIKNYFQIPDKYYISRWRRECPLLVEDDHNNQSVGGEWFQEYQSLAETLFSESSITKERSDYARKELTKELTRILNEVRNLPEPETDGVLMNISVSPTS. 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04555 693 Pfam SWIM zinc finger 570 594 IPR007527 GO:0008270
Seca5g04555 693 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 663 IPR031052 GO:0006355
Seca5g04555 693 SMART 26again6 573 600 IPR006564 GO:0008270
Seca5g04555 693 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Seca5g04555 693 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Seca5g04555 693 Pfam MULE transposase domain 291 384 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04555 Seca-Chr5 102939138 102942263 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g04555 MULE 3.8e-15 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04555 - - aprc:113874854 1280