Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04553 ATGCTGATGGGCAGTGATCAAAGTCAACAACCATTCCTTTCAGAGTCAAGAGAACACTGTCATCTCAATGAGAAGAGTGAGCTACAGAGAAGAAGGCTCCAATATGACAGTGCTTCAGAGACACAGATCAATCACCAAGAACAAAATGATGTCCAAAATCCTCTACACCCTCAATGTATAGCTGCAAAATCAGATTTCAATTTCAAGCAAGTGTTTTTGTTGTTTGCTATCTACTTAGGTGGAGGTACCCTATGTTTCTTTTTCACTGAGTATCAGATCAAGGGTATAAAAACCAATGGGTTTCTTGATTCTGTTTACTTCTGTGTTGTTACTATGACTACTGTTGGATATGGAGATCTAGTGCCTAATAGCTCATTGGCAAAACTTCTTGCCTGCATTTATGTCTTCATTGGCATGGCCCTTGGTGGATTAATTCTTAGCAAGGCAGCAGATTACATTGTTGAAAAGCAGGAAAACTTATTGGTTGGAGCTATACACATGGGCTATAAAGTTGGTCATGCAGAGGTTCCTAAAGAGCTTGAAGCCAACAAAACCAAATACAAATTAATGCTAGCAGCAGCCACTCTTGTGGGGCTCATGATTGTTGGAATTACTTTTCTGTATTTTGTTGAAAATCTAGAATTTATGGATGCCTTGTATTTTGTTTGTTCAACAGTCACTACCTTGGGTTATGGGGATAAGAGCTTCTCAACTGCTGAGGGTCGTATTTTTGCTGTTTTCTGGATATTGAGTGGTACCATTTGCTTAGCTCAGTTCTTTCTCTATCTTGCTGAACTATACACTGAAGGTAGACAAAAATCACTGGCAAAAATGGTTCTTTCACGAAGATTGTCACTCTCAGATCTTGAGACAGCAGATCTTGATCAAGACAAAGTTGTTAGTGCTGCAGAATTCATTGTATACAAGTTGAAGGAAATGGGAAAGATAAGTGAAGAAGACATTGCAGTTGTGATGGAGAGCTTTAGAAAACTAGACTATGATAATTCAGGAACTTTAACAGAAGCTGATATCAGATTCTGTGAATCTTCTTAA 1053 0.3846 MLMGSDQSQQPFLSESREHCHLNEKSELQRRRLQYDSASETQINHQEQNDVQNPLHPQCIAAKSDFNFKQVFLLFAIYLGGGTLCFFFTEYQIKGIKTNGFLDSVYFCVVTMTTVGYGDLVPNSSLAKLLACIYVFIGMALGGLILSKAADYIVEKQENLLVGAIHMGYKVGHAEVPKELEANKTKYKLMLAAATLVGLMIVGITFLYFVENLEFMDALYFVCSTVTTLGYGDKSFSTAEGRIFAVFWILSGTICLAQFFLYLAELYTEGRQKSLAKMVLSRRLSLSDLETADLDQDKVVSAAEFIVYKLKEMGKISEEDIAVVMESFRKLDYDNSGTLTEADIRFCESS. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04553 350 Gene3D - 51 162 - -
Seca5g04553 350 Gene3D - 255 349 - -
Seca5g04553 350 PRINTS Two pore domain K+ channel signature 227 236 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca5g04553 350 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca5g04553 350 SUPERFAMILY EF-hand 242 345 IPR011992 -
Seca5g04553 350 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 71 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca5g04553 350 SUPERFAMILY Voltage-gated potassium channels 184 281 - -
Seca5g04553 350 Pfam Ion channel 196 267 IPR013099 -
Seca5g04553 350 Pfam Ion channel 78 154 IPR013099 -
Seca5g04553 350 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Seca5g04553 350 SUPERFAMILY Voltage-gated potassium channels 64 155 - -
Seca5g04553 350 Gene3D - 194 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04553 Seca-Chr5 102934246 102938862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04553 52 350 Ion Channels AT5G55630 57.807 6.03e-122 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04553 K05389 - gmx:100799492 461.84