Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04545 ATGGGGAATGTGAATGGGAGAGACGATGTGAATGGTTCTCCATCAGGGGCTGAAGACGAAGAAGAAGAAGGAAGAGGAGGAGGTTGTGACAGTGTGAGCGATTGCATGTCTGCACCCGATGGGATTGGGAACCCTGCGCCTTCTGAATTGATGGGTCATTCTCCCCCTGCTAGCCCTAGAGCAACCCAATCTCCATTCATGTTCACCCCTCAAGTCCCAGTGGTACCACTACAAAGGCCTGATGAGATGCATGTTCTAAGCCCGTCCTGGATGCAAACTACTTCAGGGTATGAGGATGTATACAGTGAACTAGGAATTCCAACAATGATTACTTGGAGTTATGATGGTGAAGAAGTAGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAATGCCATTGCAGAGATCAGGAAAGGATTTCACAATAATGAAGGTACTGCCATCTGGTGTTTACCAGTTTAGATTTATTGTAGATGGACAGTGGAGGTACGCTCCTGACTTGCCTTGGGCCCAAGATGATACTGGGAATGCTTACAACATTTTGGACTTGCAGGATTATGTTCCTGAAGACATTGGAAGCATATCTAGTTTTGAACCTCCTAAATCACCAGACTCTAGTTATAACAACTTACAACTCAGTTCTGAAGATTATGCAAAGGAGCCACCATTTGTTCCTCCATTCTTGCAAATGACCCTCCTTAATGTTCCTTCAACAAATATGGAAATCCAGCCTCTTATGTCCAGACCTCAGCATGTATTGCTCAATCATCTCTATATGCAGAAAGAAAAGAGCAGCCCTTCAGTGGTTGCACTTGGTACAACTCATCGGTTTCTAGCCAAATATGTCACTGTGGTGCTGTACAAGTCTTTGCAGAGATAA 882 0.4456 MGNVNGRDDVNGSPSGAEDEEEEGRGGGCDSVSDCMSAPDGIGNPAPSELMGHSPPASPRATQSPFMFTPQVPVVPLQRPDEMHVLSPSWMQTTSGYEDVYSELGIPTMITWSYDGEEVAVEGSWDNWKTRMPLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDTGNAYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDYAKEPPFVPPFLQMTLLNVPSTNMEIQPLMSRPQHVLLNHLYMQKEKSSPSVVALGTTHRFLAKYVTVVLYKSLQR. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04545 293 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 293 IPR043554 -
Seca5g04545 293 Gene3D Immunoglobulins 101 188 IPR013783 -
Seca5g04545 293 SMART AMPKBI_2 201 291 IPR006828 GO:0005515
Seca5g04545 293 MobiDBLite consensus disorder prediction 1 66 - -
Seca5g04545 293 SUPERFAMILY E set domains 106 191 IPR014756 -
Seca5g04545 293 CDD E_set_AMPKbeta_like_N 107 183 - -
Seca5g04545 293 Gene3D - 194 291 - -
Seca5g04545 293 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 219 289 IPR006828 GO:0005515
Seca5g04545 293 Pfam Glycogen recognition site of AMP-activated protein kinase 106 185 IPR032640 -
Seca5g04545 293 SUPERFAMILY AMPKBI-like 188 290 IPR037256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04545 Seca-Chr5 102887359 102890667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04545 105 186 Protein tyrosine phosphatase (PTP) family AT3G01510 32.955 1.22e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04545 K07199 - gmx:100777497 525.783