Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04542 ATGGCTGAATCTGACAACGAGTCAGGGGGTCAAACGGGAAACAATGAATTTTCAGGATGCAGAGAGCAAGACAGGTTTCTTCCCATAGCGAACGTGAGCAGGATCATGAAGAAAGCTTTACCAGCAAACGCTAAGATCTCAAAGGAAGCCAAAGAAACAGTGCAAGAGTGTGTATCAGAGTTTATCAGTTTCATAACAGGGGAGGCTTCTGATAAGTGCCAGAAAGAGAAGAGGAAGACAATCAACGGTGATGATCTCCTCTGGGCCATGACCACACTTGGTTTTGAAGATTATGTGGACCCTCTCAAGATTTACCTTCACAAGTATAGGGAGATGGAAGGGGAGAAGACTGCTGTGCCTGTCATAGGTGAACAGAGAGATCATGGGAATGCTGCTGCTGAGGCTAGTCATGCTCATGGTGGTGTGGTGCCATCTCCTATGATGATGATGATGGGGCATCAACATCAAGGCCACATGTATGGATCTGGGAGTGGATCAGCATCTTCTGGAAGGGCTAGATAG 522 0.4693 MAESDNESGGQTGNNEFSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVDPLKIYLHKYREMEGEKTAVPVIGEQRDHGNAAAEASHAHGGVVPSPMMMMMGHQHQGHMYGSGSGSASSGRAR. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04542 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Seca5g04542 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca5g04542 173 SUPERFAMILY Histone-fold 23 119 IPR009072 GO:0046982
Seca5g04542 173 Gene3D Histone, subunit A 15 139 IPR009072 GO:0046982
Seca5g04542 173 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Seca5g04542 173 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Seca5g04542 173 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Seca5g04542 173 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g04542 173 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca5g04542 173 FunFam Nuclear transcription factor Y subunit B-3 15 139 - -
Seca5g04542 173 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04542 Seca-Chr5 102851244 102852389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04542 1 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 66.667 1.91e-70 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca5g04542 CBFD_NFYB_HMF 1.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04542 K08065 - gmx:100305641 246.514