Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04539 ATGGACCTTTTCGCCGCCGATCACGTCGCTCCATTTCCCGATTCCGGCGACCTCATTTACGCCACCGACCTCCTTTCCCACCGCCACAATCCCCAGAAGCTCCGCCCCATCAGGTCCTCCACCTCCGCTGGTTACGTCCTCCATCCCGACTCTTCATCTCGCAACCTCCACACTCCACCCCACCTTCTAGCACCTCCACCCCAGCCACAGGATCCGGCTGTTCCCGGGTCGGGTCACGCACAGTTGCAACCGGGGCAGGAATCTGGCTCGGCTTTGGATGATGATGATGATGAGGAGGAGGAGGAGGAGGATGACAATTCATCAGTAAGTACTAGAGAACTTGGGTCTAGAAAGAGAAGGAAAAAGACAGTGAGAAAGCTTGAAGATTTTGTGGAAAATTTGGTAATGAAGGTGATGGAAAAGCAAGAGCAGATGCATAAAGAATTGGTGGACATGATAGAGAACAGGGAAAAGGAAAGAATAAAGAGAGAAGAAGCATGGAAGCGTGAGGAGATGGAAAGAATTAAAAAGGATGAAAAAGCTAGAGCTCAAGAAAGGTCTCGTAATTTAGCTCTCATATCATTCATTCAGAACCTATTGGGCCATGAAATTCAAATCCCTCAACCAGCAGAAGGAAGCAGCAAAAGAGAAGAGGATGAAGTTGAGGTGAACATTCAAAAAGATTTCAATTTCAGCAGTTATCTAAGTAACAACAGATGGCCAGATGTTGAAGTACAAGCACTCATAACTGTGAGAACTTCATTGGACCACAAGTTTCGTCTCATTGGATCTAAAGGATCATCAATATGGGAAGAGATATCTGAAACAATGCATGGCATGGGATACAAACGTTCTGCAAAGAAGTGTAAGGAGAAGTGGGAAAACATCAACAAGTACTATAAGAGGACAGTGGGGAGCGGCAAGAAAAGGCGTCAAAATAGTAAAACTTGCCCTTACTTTGATGAGCTTGACATTCTATATAGAAATGGGCTCCTCAATCATGGAAATACGTTGAGCAATACCAACAGTGTTCCCAACCTTGAAGAAAAGGAAAAGAGTGAAACTTGA 1068 0.4532 MDLFAADHVAPFPDSGDLIYATDLLSHRHNPQKLRPIRSSTSAGYVLHPDSSSRNLHTPPHLLAPPPQPQDPAVPGSGHAQLQPGQESGSALDDDDDEEEEEEDDNSSVSTRELGSRKRRKKTVRKLEDFVENLVMKVMEKQEQMHKELVDMIENREKERIKREEAWKREEMERIKKDEKARAQERSRNLALISFIQNLLGHEIQIPQPAEGSSKREEDEVEVNIQKDFNFSSYLSNNRWPDVEVQALITVRTSLDHKFRLIGSKGSSIWEEISETMHGMGYKRSAKKCKEKWENINKYYKRTVGSGKKRRQNSKTCPYFDELDILYRNGLLNHGNTLSNTNSVPNLEEKEKSET. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04539 355 Pfam Myb/SANT-like DNA-binding domain 238 324 IPR044822 -
Seca5g04539 355 Coils Coil 139 159 - -
Seca5g04539 355 MobiDBLite consensus disorder prediction 90 107 - -
Seca5g04539 355 ProSiteProfiles Myb-like domain profile. 232 297 IPR001005 -
Seca5g04539 355 Gene3D - 240 302 - -
Seca5g04539 355 MobiDBLite consensus disorder prediction 35 58 - -
Seca5g04539 355 CDD GT1 238 303 - -
Seca5g04539 355 PANTHER FI21293P1 73 352 - -
Seca5g04539 355 FunFam Trihelix transcription factor GT-2 240 302 - -
Seca5g04539 355 MobiDBLite consensus disorder prediction 31 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04539 Seca-Chr5 102837590 102839755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04539 118 329 Trihelix Transcription Factor Family AT5G47660 44.444 8.46e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca5g04539 Myb_DNA-bind_4 3.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04539 - - gmx:100820302 443.736