Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04533 ATGATTCAACTTCTTTGTAGGATTATAATGAGTGAACAATTGGGGCTGCTGAAAGTCAAAGTTGTGCAGGGGAAAAGGTTGGTCATCCGGGATTTCAAGAGCAGTGATCCATATGTTGTGCTCAAACTAGGGAATCAGGAAGTATTTGATAAAGATCTTCTGAAGGCTGATGACAAGATGGGAAATGCTTTTGTAAACCTTCAACCATTAGTCTCAGCAGCTAGATTAAGAGATATTTTACGAGTCTCTTCTGGTGAAACAACATTAAGGAAGGTTATACCTGATAGTGAAAATTGTCTTGTCCGTGAAAGCAGTATCAATTGTGTTAATGGTGAGGTGATGCAGAATGTTTGGTTAAGGCTTCGTGGAGTAGAATCTGGGGAGCTAGAATTGACAATCAAGTTGGTCACACCTGTTTCTACTTCAATGTAA 432 0.3935 MIQLLCRIIMSEQLGLLKVKVVQGKRLVIRDFKSSDPYVVLKLGNQEVFDKDLLKADDKMGNAFVNLQPLVSAARLRDILRVSSGETTLRKVIPDSENCLVRESSINCVNGEVMQNVWLRLRGVESGELELTIKLVTPVSTSM. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04533 143 Gene3D C2 domain 5 48 IPR035892 -
Seca5g04533 143 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 47 137 IPR044562 -
Seca5g04533 143 Pfam C2 domain 15 46 IPR000008 -
Seca5g04533 143 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 135 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04533 Seca-Chr5 102783926 102786551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04533 10 136 C2H2 Transcription Factor Family AT4G21160 35.220 2.54e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04533 - - gmx:100499880 222.631