Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04529 ATGGACAACTCCAAGATGTTCAACTATGGCAGCACCAGCGTGAGTGAGATAGAGGAAGAGAACTCCAACTCCTCACAGTTGTATTTGAATGATGGTCCTACTCCTACTCCTATTCCTATTCCTATGGCAACCATTAGTGAAGAGAATGAGGCTGAAGACACTGTTTATGTAGCAGTTGGTAAGAGTGAAACTAGCATGGAAGCCCTGTCATGGACCCTCAATAACTTTGTTACTCCATCTACCTTTGTGTATCTCATACACGTTTTCCCAGAGATCAAGAACATTCCAAATCCCTTGGGAGTGGGAATGATCCCAAAGGAGCAAGTGAGTCCTGAGCAAGTGGAGAGCTATATGGCCCAAGAAAGAGGTAAGAGGAGAGAGCTACTACACAAGTTCCTCCAATCATGCTCTGCTTCCAAGGTTAAGGTGGACACCATCCTGATTGAGAGTGACTTGATTGCTAAGGCTATCATTGACCTGATTCCCATTCTTCAAATAAGAAAACTAGTGATTGGAGCCAACAAATCCCATTTAAGAAAACTAAGATCAAGGAAAGGAAATGGCATAGCTGATCAGGTACTTCAGAATGCACCAGAAAGTTGCAAGGTGAGAATTGTATGTGAAGGGAAGGAAGTGAATGAACAGATAGCTCGTGCCATTGCTAATGATAGTTCCATGTCCCAGAAAGAAGATCAGCAAAATGATTGGGAAACAAGGCATGAGTGCTTGCACTATGATTCCGATGAAGAAACCTCCACTTGCACCTGTGTTTTCACTGGATTCAGAAGAAACCAAGTGTTTGATTACAACCAAAGTTTCAGCACAAATGAAGATTCAGAGGAGATGTTTGAGATCAATCTAAAGTTGCCATTGGATGCAATATCAGAAGATTGTGAGAGCAGTGTGTTCTCTTTTGATATTCACAATGAGAAAGATATTGTTCATGTGGCAGTGGACCATACTGGAGAATCAAGCATGGAAGCACTTTTGTGGACTTTGAAACATGCTGTGACACCCTCTACCACTGTCTATCTCATACATGTTTTTCCTGAAATCAGGCTTATTCCAACTCCACTTGGAAAAATTGTAAGGAGTCATGTAAATCCAGAGCATGTTGACTTTTACTTGACTCAAGAGAAAAGCAAGAGGAAACTGCTCCTTCAAAAGTTCATTGATGTGTGCACTAATTCAAAGGTTGAGGTGGAGATGATGCTTATTGAGGGTGACAACATTGCCAATACCATAGTGGACCTTGTTAGGAATCTTAGCATAAGGAAATTGGTGATTGGAACTACCAAATCTAACTTAAGCAAATCTGTGCCTAGAAAGAGGAATGCCATAGCAGATAAGGTCCTAAAGAATGCACCAGAAATCTGTGATGTTAAAATAATATGTGATGGAAAGGAAGTGATTGATCAGATGATTGGTCGCACTTCATCATGCTCCAGTGATGGTAGCAGTTCCAGAGTTTCACAAGAAGAAGATAAATTCCATGGTTTTGCTCCTCTTGTGCGTTTTATGCCTAATCCTATATGGTTATTCAAACCCAGATTTTGA 1557 0.4098 MDNSKMFNYGSTSVSEIEEENSNSSQLYLNDGPTPTPIPIPMATISEENEAEDTVYVAVGKSETSMEALSWTLNNFVTPSTFVYLIHVFPEIKNIPNPLGVGMIPKEQVSPEQVESYMAQERGKRRELLHKFLQSCSASKVKVDTILIESDLIAKAIIDLIPILQIRKLVIGANKSHLRKLRSRKGNGIADQVLQNAPESCKVRIVCEGKEVNEQIARAIANDSSMSQKEDQQNDWETRHECLHYDSDEETSTCTCVFTGFRRNQVFDYNQSFSTNEDSEEMFEINLKLPLDAISEDCESSVFSFDIHNEKDIVHVAVDHTGESSMEALLWTLKHAVTPSTTVYLIHVFPEIRLIPTPLGKIVRSHVNPEHVDFYLTQEKSKRKLLLQKFIDVCTNSKVEVEMMLIEGDNIANTIVDLVRNLSIRKLVIGTTKSNLSKSVPRKRNAIADKVLKNAPEICDVKIICDGKEVIDQMIGRTSSCSSDGSSSRVSQEEDKFHGFAPLVRFMPNPIWLFKPRF. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04529 518 Gene3D HUPs 44 218 IPR014729 -
Seca5g04529 518 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 316 463 - -
Seca5g04529 518 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 54 203 - -
Seca5g04529 518 Gene3D HUPs 307 464 IPR014729 -
Seca5g04529 518 CDD STK_N 54 209 - -
Seca5g04529 518 MobiDBLite consensus disorder prediction 1 30 - -
Seca5g04529 518 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 10 257 - -
Seca5g04529 518 Pfam Universal stress protein family 314 456 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04529 Seca-Chr5 102752418 102758589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04529 322 488 Plant U-box Gene Family AT5G57035 27.647 7.92e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04529 - - gmx:100818837 432.95