Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04524 ATGGACTCAAAAAGTAGTTCTAGAGTTCCCCCAAAACATAATCAGAAGACGGCTGGGATTCAAAACCTTGAGGCAAAAGACATCAGGCCCTCTTCACTGCCAGGTCAGAAGACAGGCAAACCTGAGCTGGCTGCTCCAGAAGATTTGTCTAAGTCTGTACAGAACACATCAAAGCAGAATACTGTTGAAATTTCTGAAAGCAAGAAGTTGGGAGTTTCAATCCAAAAGGGGTCTGCTGATTCCTTGAGTAATAAATGTGGTTCTGGTGCTTCCTCATCATCCGTTCTTGACAAGGCACCTGGAGAAGTGGTTCATGCTGTTAATGAGAACATAGGCTCACAGGAAAGCTCTATTGATCAAGAGAAAAAAACATCGGAATATGGAAGTGTGAAGAACAGTTCTGTTTCTGCCAAAGCTAGCGATGGGGCCAGCAGTCTTGCAAAGACAAGTGGAAGTGCCAAGATCAGTGATCGAGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTGCAGAGGAAGTACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGCATAAACAAGCCTCACAAGGCCAATGACTTGAGATGGGAAGCTATCCAAGCAGTTCGAACTAGAGATGGGGCATTGGGCTTAGGTCACTTTAGACTACTGAAGAGGTTGGGTTGTGGGGATATTGGCAGTGTTTACCTCTCTGAATTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTAATGGACAAAGGGTCCCTTGCTAGTCGTAAAAAGCTACTTCGTGCTCAGACAGAACGAGAAATTCTTCAGTCACTTGACCACCCTTTTCTCCCAACTTTGTACACCCATTTCGAGACAGAGAAATTCTCATGCTTGGTAATGGAATTCTGCCCAGGTGGAGACCTCCATACCCTTAGGCAGAAACAACCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTACGTGGCAGAGGTCCTACTGGCTTTGGAGTACCTCCACATGCTCGGGATTGTCTACCGTGACCTTAAGCCCGAAAATGTCCTTGTTAGAGATGATGGACATATTATGCTCTCCGACTTTGATCTTTCCCTCCGTTGTGCTGTTAGTCCGACCCTCGTTAAAACCTCAACCATGGATTCTGAGCCTTTAAGAAAGAATTCTGGTTACTGTGTTCAGCCTGCATGTATTGAGCCACCTTCCTGCATTCAGCCATCCTGTGTTGCTCCTACTACATGCTTTTCACCCCGTCTCTTTTCTAGCAAATCAAAGAAGGACCGGAAGCCCAAAACTGAAATTGGCAACCAAGTGAGTCCATTACCTGAGCTCATTGCAGAACCTACTGATGCTCGGTCTATGTCATTTGTTGGAACTCATGAATACTTGGCCCCTGAGATCATTAAGGGTGAAGGTCATGGGAGTGCAGTCGATTGGTGGACTTTTGGAATCTTTCTATATGAGCTGTTGTTTGGTAAAACTCCTTTCAAGGGATCTGGAAACCGAGCTACGTTGTTTAATGTTGTAGGTCAGCCCCTGCGATTTCCAGAAGCACCTGTTGTCAGTTTTGCAGCAAGGGATCTTATAAGGGGTTTGCTTGTAAAGGAACCTCAGCACAGATTGGCATATAAACGAGGTGCTACTGAGATTAAGCAACATCCCTTTTTTGAAGGTGTGAATTGGGCATTGATCCGGTGTGCCACCCCACCTGAGATCCCAAAGGCTGTAGAGTTTGAGAAGATACCTTCCCCAGCCTCATCAACTGGTGAAAAGGCTGTTCACAATATGTCAACAGCTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1848 0.4486 MDSKSSSRVPPKHNQKTAGIQNLEAKDIRPSSLPGQKTGKPELAAPEDLSKSVQNTSKQNTVEISESKKLGVSIQKGSADSLSNKCGSGASSSSVLDKAPGEVVHAVNENIGSQESSIDQEKKTSEYGSVKNSSVSAKASDGASSLAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQAVRTRDGALGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSTMDSEPLRKNSGYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPASSTGEKAVHNMSTANQKGSDNYLEFDFF. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04524 615 Pfam Protein kinase domain 455 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04524 615 Pfam Protein kinase domain 221 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04524 615 SMART serkin_6 220 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04524 615 FunFam Serine/threonine-protein kinase AGC1-7 451 576 - -
Seca5g04524 615 FunFam Serine/threonine-protein kinase D6PK-like 218 303 - -
Seca5g04524 615 ProSiteProfiles Protein kinase domain profile. 220 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04524 615 Gene3D Transferase(Phosphotransferase) domain 1 452 576 - -
Seca5g04524 615 MobiDBLite consensus disorder prediction 1 149 - -
Seca5g04524 615 Gene3D Phosphorylase Kinase; domain 1 218 303 - -
Seca5g04524 615 PANTHER FLIPPASE KINASE 1-RELATED 54 582 - -
Seca5g04524 615 Gene3D Transferase(Phosphotransferase) domain 1 304 379 - -
Seca5g04524 615 MobiDBLite consensus disorder prediction 127 149 - -
Seca5g04524 615 SUPERFAMILY Protein kinase-like (PK-like) 196 580 IPR011009 -
Seca5g04524 615 CDD STKc_phototropin_like 219 576 - -
Seca5g04524 615 FunFam serine/threonine-protein kinase D6PK-like 304 371 - -
Seca5g04524 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 341 353 IPR008271 GO:0004672|GO:0006468
Seca5g04524 615 MobiDBLite consensus disorder prediction 49 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04524 Seca-Chr5 102710562 102715363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04524 39 615 AGC Kinase Gene Family AT5G47750 77.893 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca5g04524 Pkinase 1.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04524 K08286 - gmx:100781600 1056.97