Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04491 ATGTATCCAAGATTGATACACCCTCACGAAGGGATTGTTGGGCAGGAAGATATGCAAGGTGGGGGTGCCTCTAACCACAAGGGAGACCCATGTCTTGTTTTGACAGCTGATCCAAAACCTCGCCTTCGTTGGACTCAGGACCTCCATGAACGATTCGTTGATGCAGTCACCCAGCTTGGGGGTGCTAGTAAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTTTGACTCTATTTCATTTGAAGAGTCATCTTCAGAAATACAGACTTGGTAAGCAATCAGGGAAAGATATGGGTGAGGGATGTAAAGATGGAATATCAGGTTCATATCTTTTAGAAAGCCCTGGTACTGATAATACTTCTCCAAAGTTGCCAACTTCTGATACAAACGAGGGTTATGAAATCAAGGAGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAACTACATTTGCAAGTGGAGGCAGAGAAGCACCTGCAGATTCGCCAGGAAGCTGAGCGGAGATATATGGCCATGCTTGAAAGAGCCTGCAAGATGCTGGCTGATCAATTTCTTGGTGCTACAGTTATAGACACTGATAGCCAAAAGTTTCAAGGAATTGGAAGTAAAGCACCAAGAAGTTCCATGGTTGATCCTCTTGGTTTTTACTCCTTGCCATCTGCTGAGGTGGCTGGAGTGAATGTCCCAGAAGAAGAAATACCACCAAGTCTCCCACCCCAAAGGGCTGATTGTTCAACTGAAAGTTGTTTAACCTCCCATGAGAGTTCTGGTGGATTGACTCTAGAAGGATCTCCAGGTGGGGGCAAAAGGAGGATGCTAGGCATGGACTCTATGGCAGCACCTTTGATCTGGACTGAAGCTAAGATGAAAACTCAAGCCATCAATGTAGCCCATGGTAATTCTCATGGAATAACTAGGTATGGCATGTAG 939 0.4537 MYPRLIHPHEGIVGQEDMQGGGASNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEGCKDGISGSYLLESPGTDNTSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQEAERRYMAMLERACKMLADQFLGATVIDTDSQKFQGIGSKAPRSSMVDPLGFYSLPSAEVAGVNVPEEEIPPSLPPQRADCSTESCLTSHESSGGLTLEGSPGGGKRRMLGMDSMAAPLIWTEAKMKTQAINVAHGNSHGITRYGM. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04491 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 96 IPR017930 -
Seca5g04491 312 MobiDBLite consensus disorder prediction 110 132 - -
Seca5g04491 312 MobiDBLite consensus disorder prediction 1 27 - -
Seca5g04491 312 MobiDBLite consensus disorder prediction 244 262 - -
Seca5g04491 312 NCBIfam myb-like DNA-binding domain, SHAQKYF class 39 94 IPR006447 GO:0003677
Seca5g04491 312 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Seca5g04491 312 Pfam Myb-like DNA-binding domain 42 92 IPR001005 -
Seca5g04491 312 Gene3D - 38 96 - -
Seca5g04491 312 MobiDBLite consensus disorder prediction 235 275 - -
Seca5g04491 312 FunFam Myb family transcription factor 38 96 - -
Seca5g04491 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 263 IPR044848 GO:0003700
Seca5g04491 312 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Seca5g04491 312 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04491 Seca-Chr5 102371417 102377007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04491 24 255 G2-like Transcription Factor Family AT3G24120 44.628 2.84e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca5g04491 Myb_DNA-binding 5.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04491 - - gmx:100782369 559.296