Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04485 ATGGAAGGATTTACTGAGACACAAGTTACTACAATGGGTGTAAGGGATAACTTGTTGGTTGTTGGAGGCAATGACAGAGAACTTATTGTCAAGCGCATAGATCAACCTGGGGTTAGTTTTTGTTTCAGAATAGCTTCTAGAGAAGGCATAAATACAACTGCTATTGATATTTACAAGCATCCGAGTGGAGGAATTCAGTTCATGGCTTCAAACCAGAAGGGTAGTGTCAAAGTCTTTGATACAGAGAAATTTGAGATGTTGGATGATTTCTTATTTCTCTGGCCAGTATATAGTGCTTCATTGAGCCCCGATGGAAGGCAGCTTCTAGTTGTTGGAGACAACCCAGAAGGGAGATTGTTGGATTATGATACCGGAAATCCTATCGCACTTTTAACTGGACAGAGTAGTGAGAGATTTTTTTCATCAGCGTGGCATCCTGATGGGTACATTTTTGCCACTGGAGACAGTGACCGAACATGTTACATTTGGGATGTTCGGAATATGTCAAAGTCAGTTGTTGTTCTTAATGGAAGCGTGGGAGCCGAAGGTATTCATTCAATACATTTCACATCTGATGGGGAATTGATGGCAATGGCTGAGGGTCGTAATTGCGTGTATCTCTATGACGTAAAGAGTGGGTTTGAGGATGAGAAGAAGCAAGAGATGGAATTTTCTGGCTATATCTCTGGTTTATCTGTTAGTCCTGACGCAGAATCGCTTTTTATAGGTGTCGCTCTAGAAAATAGCAATCCAAGCGTTTTATTGTTCAATCGATGCAGAATGTGA 786 0.4122 MEGFTETQVTTMGVRDNLLVVGGNDRELIVKRIDQPGVSFCFRIASREGINTTAIDIYKHPSGGIQFMASNQKGSVKVFDTEKFEMLDDFLFLWPVYSASLSPDGRQLLVVGDNPEGRLLDYDTGNPIALLTGQSSERFFSSAWHPDGYIFATGDSDRTCYIWDVRNMSKSVVVLNGSVGAEGIHSIHFTSDGELMAMAEGRNCVYLYDVKSGFEDEKKQEMEFSGYISGLSVSPDAESLFIGVALENSNPSVLLFNRCRM. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04485 261 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 173 IPR001680 GO:0005515
Seca5g04485 261 Gene3D - 3 140 IPR015943 GO:0005515
Seca5g04485 261 Pfam WD domain, G-beta repeat 131 164 IPR001680 GO:0005515
Seca5g04485 261 Gene3D - 141 257 IPR015943 GO:0005515
Seca5g04485 261 SMART WD40_4 168 209 IPR001680 GO:0005515
Seca5g04485 261 SMART WD40_4 215 257 IPR001680 GO:0005515
Seca5g04485 261 SMART WD40_4 124 164 IPR001680 GO:0005515
Seca5g04485 261 SUPERFAMILY WD40 repeat-like 15 243 IPR036322 GO:0005515
Seca5g04485 261 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04485 Seca-Chr5 102325516 102327732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04485 121 234 U-box Gene Family AT1G04510 30.081 4.83e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04485 - - cit:102630799 283.493