Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04465 ATGAATGTCCTCAGCTACCTCTATCATCTTTCACTATCCCTCTCTCAGTCTCTCAGGTTTCAATACCTAACTGCTCATAGTTTTCTTCTGTATGTCAGAATGATGGATAAGACACAACTCCAAGGACAAATTCCTGTTTCTTTGTTCAGCCAGCTGGAACTGTTGCAGACAGTGGTGCTGAGAGACAACCGGCTGAATGGCACTTTAGATATTGGCACAGCCATGAGTAACGAACTGGTACTCCTTGATTTGCAGAAAAATTTAATTGAAGAATTTGCTCCAAAAATTGATGTCTCCAAAGTGGAAATAATACTTGTGGATAACCCAGTTTGTCAAGACACAGGAGTTGTACAGACTTACTGCTCCATTGCAAAATCCAATGACTCATACAAAACACTACCAAATAACTGTGTGGCTGCTGTTACCTGTAACTTAGATCAGATATTAAGCCCCAACTGCAAATGTGCATACCCATATACAGGAACTTTAAATTTCAGATCTACTTCCTTCTCAGACTTGGGAAATCAGACTGTCTTCCGAAACCTAGAGTTATCTTTGATGCAGTCTTTTCAACTTTATGATAAACCTGTGGATTCAATTTCTTTAAGCAATCCAAGAAAGGATGAAATTCAGTATCTTGAGTTGACATTAGAAATATTTCCATCAGGCCAAGATCATTTCAATCGAACTGGGATGTCTGGTATAGCCTTTATGCTTAGCAACCAGACATATAAGCCTCCTAAAGAAATGTTCGGACCATATTATTTTATTGCTGATACGTATGCACACTATTTGGATGATTTAGGTCCTGCGGAGTCCAGTAAATCTTCAAATATTGGCATCATAGCTGGTGCTGCTGCTGGTGGTTCTGTCCTGCTTGTGTTATTACTCCTTGCAAGTGTTTATGCTTTCCGCCAAAAGAAGAAGGCAAAAAGAGCAACTAGGAGAAGCAATCTTTTTGAACAATGGGATCCGGATGAGAGCAATAGTAACATCCCACAGTTAAAAGGAGCAAAGCGCTTCACTTTTGAAGAGATGCAGAACTACACCAGAAACTTTTCACAAAGCAATAATATAGGATCTGGGGGTTATGGAAAGGTTTATAGGGGAACTCTTCCTAATGGGCAACTAATTGCAGTAAAACGAGCTCAAAAGGAATCAATCCAGGGAGGGTTGGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCACCACAAAAATCTTGTCACCCTTCTCGGTTTCTGCTTTGAGCAAGGAGAACAAATGTTGGTTTATGAGTACGTTGCAAATGGTACTTTGACTGATGCTCTTTCAGGGAGGTCAGGAATTAGATTCGATTGGATTAGAAGGCTGAAAATAGCTCTTGGTGCTGCCAGGGGATTGGATTATCTGCATGAACTTGCCAATCCTCCTATCATACACAGAGACATCAAATCCACTAACATTTTATTGGATGAACGCTTGAACGCTAAAGTTGCTGATTTTGGTCTTTCCAAGCCTTTGGGTACTGGTGGAAAACGTTATATCACCACTCAAGTCAAAGGAACAATGGGCTACTTGGACCCAGAGTATTACATGACTCAACAGTTGACTGAGAAGAGTGATGTCTTTAGCTTTGGAGTGCTAATGTTGGAGCTTATGACTGGAAGAAAGCCAATAGAACGAGGTAAATATATTGTGAAATTGATTAAGAATGCTATTGACAAGACAAAAGACTTATATGGTCTTAAGGAAATGCTTGATCCAACCATTGAGTTGGGGACAACACTGAACGGTTTTGATAAGTTTGTGGATCTTGCAATGCAATGTGTCGAAGAGTCAAGTTCTAATAGGCCTTCAATGAATTATGTGGTGAAAGAAATTGAGAACATGTTGCAGTTGGCTGGTTCAAACCCCCATGCTGATTCAACATCCACTTCATCAAGTTTTAATATGAGTAAGGGGAGTCCCACGCATCCTTATGACAATGATTACTTTGGTTCAAGTGTGGTACTTCTACGTGCATAA 2010 0.4 MNVLSYLYHLSLSLSQSLRFQYLTAHSFLLYVRMMDKTQLQGQIPVSLFSQLELLQTVVLRDNRLNGTLDIGTAMSNELVLLDLQKNLIEEFAPKIDVSKVEIILVDNPVCQDTGVVQTYCSIAKSNDSYKTLPNNCVAAVTCNLDQILSPNCKCAYPYTGTLNFRSTSFSDLGNQTVFRNLELSLMQSFQLYDKPVDSISLSNPRKDEIQYLELTLEIFPSGQDHFNRTGMSGIAFMLSNQTYKPPKEMFGPYYFIADTYAHYLDDLGPAESSKSSNIGIIAGAAAGGSVLLVLLLLASVYAFRQKKKAKRATRRSNLFEQWDPDESNSNIPQLKGAKRFTFEEMQNYTRNFSQSNNIGSGGYGKVYRGTLPNGQLIAVKRAQKESIQGGLEFKTEIELLSRVHHKNLVTLLGFCFEQGEQMLVYEYVANGTLTDALSGRSGIRFDWIRRLKIALGAARGLDYLHELANPPIIHRDIKSTNILLDERLNAKVADFGLSKPLGTGGKRYITTQVKGTMGYLDPEYYMTQQLTEKSDVFSFGVLMLELMTGRKPIERGKYIVKLIKNAIDKTKDLYGLKEMLDPTIELGTTLNGFDKFVDLAMQCVEESSSNRPSMNYVVKEIENMLQLAGSNPHADSTSTSSSFNMSKGSPTHPYDNDYFGSSVVLLRA. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04465 669 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 35 644 - -
Seca5g04465 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Seca5g04465 669 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 429 638 - -
Seca5g04465 669 FunFam Leucine-rich repeat protein kinase family protein 315 428 - -
Seca5g04465 669 Pfam Protein kinase domain 354 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04465 669 ProSiteProfiles Protein kinase domain profile. 353 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04465 669 SUPERFAMILY Protein kinase-like (PK-like) 339 643 IPR011009 -
Seca5g04465 669 SMART serkin_6 353 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04465 669 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Seca5g04465 669 CDD STKc_IRAK 359 625 - -
Seca5g04465 669 MobiDBLite consensus disorder prediction 630 650 - -
Seca5g04465 669 Gene3D Transferase(Phosphotransferase) domain 1 429 646 - -
Seca5g04465 669 Gene3D Phosphorylase Kinase; domain 1 323 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04465 Seca-Chr5 102186771 102192015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04465 1 660 Receptor kinase-like Gene Family AT5G49760 54.505 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca5g04465 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04465 - - gmx:100780344 926.391