Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04464 ATGGGTGAAAGATATCTAGCATTCCTACTACTCATTTTCAGTTACTTGTTGATTGTGGTAGCAAAAACAGCACCTCAAGATTACAATGCTCTGCTGACTTTGAAGTTAGAGTGGCAGAACACGCCACCTGATTGGGTAGGCACAGATCCTTGTGGTGATGGTTGGGAGGGAATTCAATGCTTCAACTCACGCATTACCAGCTTATCATTAGCAAGCATGGATTTGTCTGGCCGGCTTTCATCAGATATTGGATTACTATCTGAATTGCAGATTTTTTCCTTTGTGTTTTGTTCTCAATTTTTCCTTTGCAGGGATCTATCTTACAATAAGAATTTAAAAGGATCACTTCCCAGTGAAATTGGAAACTTGAGAAAGTTGACACACTTACTTCTTATTAATTGTGGTTTCACTGGTCCTATCCCGGATACAATAGGAAATCTAGAACGGCTTGTCTTCCTATCTTTAAATTCTAATGGCTTCAGTGGGCAAATTCCACCTGCTATTGGTAATCTCTCAAAGATTTATTGGTTAGACTTAGCTGAAAACCAGCTTGAAGGGTCCATCCCCATATCTAATGGAACTACTCCTGGTCTTGATATGCTGCACCATACAAAGCATTTTCATTTTGGGATGAATAAGCTTTCAGGCAATATTCCTTCTCAACTTTTTAGCTCTGAAATGTCTCTGATACATGTACTTTTTGAAAGTAATCAACTTACTGGCACCATTCCACCTACACTTGGACTTGTCCGGTCTCTGGAAGTGGTGCGCTTTGATGATAATTTTTTAACTGGACCTTTGCCTCTGAATCTCAACAATCTTACAAATGTTCAGGAGTTGTTCCTGTCCAATAATCGCCTATCCGGTCCCCTGCCAAACCTTACTGGAATGGATGTCCTCAGCTACCTGGATATGAGCAATAATAGTTTCGATTCACCAGACTTTCCACCTTGGTTATCCACTCTAAAGTCTCTAACAACAATAATGATGGAGAGTACACATCTTCAAGGACATATTCCTGTTTCTTTGTTCAGCCTGGTACATTTACAGACAGTGGTGCTGAAACACAACCAGCTGAATGGAACTTTAGATATTGGCACATCCATCAGTAACCAACTGGGACTCCTTGATTTGCAGACTAATTTAATTGAAGGATTTAATCCACAAATTGATGTCTCTAAAGTGGAGATAATACTTGTGAATAACCCAATTTGCCAAGAAACAGGAGTTGTGAGGGCTTATTGCTCCATTAAAAAATCCAATGACTCATATACAACACCACCAAAAAACTGTGTGCCAGTTTCCTGCAACTCAGATCAGATATTAAGCCCCAACTGCAAATGTGCATTCCCATATACAGGAACTTTAACTTTTAGAGCTCCTTCCTTCTCAAACATGGGAAATGACACTGTCTTTGTAAACCTGGAATTATCTCTGATGCAGTCTTTTCAACGTTATGATAAACCTGTGGATTCAGTTTCTTTAAGCAATCCAAGGAGGAATACAGTGTACTATCTTGATTTGACTTTAAAAGTATTTCCATCAGGCCAAGATCATTTCAATAGAACAGGGATTTCTGGTATAGCCTTTCTGCTTAGTAACCAGACATATAAGCCTCCTGCAATGTTTGGACCATATTATTTTATTGCTGATAAGTATGAACATGATATGGATGATTCAGTATTAGAAGGTCCTGTGACATCCAGTAAATCTTCAAACATTGGCATCATAGCTGGAGCTGCTGTTGGTGGTTCTGTCCTGCTTGTGTTATTACTCCTTGCAAGTGTTTATGCTTTCAGCCAAAAGAAGAAGGCAAAAAGAGCAACTAGGAAAAGCAATCTTTTTGAACAATGGGATCCAGATGAGAGTGATAGTAGCATCCCACAGTTAAAAGGAGCAAAGCGCTTCACTTTTGAAGAGATGCAGAATTACACCAAAAACTTTTCACAAAGCAATAATATAGGATCTGGGGGTTATGGGAAGGTTTATCGTGGAACTCTTCCCAACGGGCAACTAATTGCTGTAAAACGAGCTCAAAAGGAATCAATCCAGGGAGGGCAGGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTTAGCCTTCTTGGTTTCTGCTTTGAGCAAGGAGAACAAATGCTGGTTTATGAGTATGTTGTAAATGGTACTTTGACGGATGCTCTTTCAGAGTATTACATGACTCAACAGTTGACTGAGAAGAGTGATGTTTATAGCTTTGGAGTGCTAATGTTGGAGCTGATAACTGCAAGAAGGCCAATAGAACGAGGGAAATACATTGTGAAAGTGATTAAGAATGCTATTGACAAGACAAAAGACTTATATGGTCTTAAGGAAATGCTTGATCCAACCATTGAATTGGGGACAACACTGAAATGTTTTGATAAGTTTGTGGATCTTGCAATGCAATGTGTTGAAGAGTCAAGTTCTAATAGGCCTTCAATGAATTATGTGGTGAAAGAAATTGAGAACATGTTGCAGTTAGCTGGTTCAAACCCCCATGCAGATTCAGCCTCCACTTCATCTAGTTTTAATGTAAGTAAGGGGAGTCCACCACATCCTTATGACAATGATTACTTTGGTTCAAGTGTGGTACTTCCACGTGCATAA 2643 0.3927 MGERYLAFLLLIFSYLLIVVAKTAPQDYNALLTLKLEWQNTPPDWVGTDPCGDGWEGIQCFNSRITSLSLASMDLSGRLSSDIGLLSELQIFSFVFCSQFFLCRDLSYNKNLKGSLPSEIGNLRKLTHLLLINCGFTGPIPDTIGNLERLVFLSLNSNGFSGQIPPAIGNLSKIYWLDLAENQLEGSIPISNGTTPGLDMLHHTKHFHFGMNKLSGNIPSQLFSSEMSLIHVLFESNQLTGTIPPTLGLVRSLEVVRFDDNFLTGPLPLNLNNLTNVQELFLSNNRLSGPLPNLTGMDVLSYLDMSNNSFDSPDFPPWLSTLKSLTTIMMESTHLQGHIPVSLFSLVHLQTVVLKHNQLNGTLDIGTSISNQLGLLDLQTNLIEGFNPQIDVSKVEIILVNNPICQETGVVRAYCSIKKSNDSYTTPPKNCVPVSCNSDQILSPNCKCAFPYTGTLTFRAPSFSNMGNDTVFVNLELSLMQSFQRYDKPVDSVSLSNPRRNTVYYLDLTLKVFPSGQDHFNRTGISGIAFLLSNQTYKPPAMFGPYYFIADKYEHDMDDSVLEGPVTSSKSSNIGIIAGAAVGGSVLLVLLLLASVYAFSQKKKAKRATRKSNLFEQWDPDESDSSIPQLKGAKRFTFEEMQNYTKNFSQSNNIGSGGYGKVYRGTLPNGQLIAVKRAQKESIQGGQEFKTEIELLSRVHHKNLVSLLGFCFEQGEQMLVYEYVVNGTLTDALSEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKVIKNAIDKTKDLYGLKEMLDPTIELGTTLKCFDKFVDLAMQCVEESSSNRPSMNYVVKEIENMLQLAGSNPHADSASTSSSFNVSKGSPPHPYDNDYFGSSVVLPRA. 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04464 880 FunFam Leucine-rich repeat protein kinase family protein 194 293 - -
Seca5g04464 880 Gene3D Ribonuclease Inhibitor 295 439 IPR032675 -
Seca5g04464 880 Gene3D Transferase(Phosphotransferase) domain 1 733 861 - -
Seca5g04464 880 SUPERFAMILY Protein kinase-like (PK-like) 622 838 IPR011009 -
Seca5g04464 880 Gene3D Phosphorylase Kinase; domain 1 619 723 - -
Seca5g04464 880 ProSiteProfiles Protein kinase domain profile. 648 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04464 880 MobiDBLite consensus disorder prediction 841 861 - -
Seca5g04464 880 SUPERFAMILY L domain-like 299 404 - -
Seca5g04464 880 Pfam Leucine rich repeat N-terminal domain 25 60 IPR013210 -
Seca5g04464 880 FunFam Leucine-rich repeat family protein 26 193 - -
Seca5g04464 880 FunFam Leucine-rich repeat protein kinase family protein 612 723 - -
Seca5g04464 880 PANTHER RECEPTOR-LIKE PROTEIN 55 735 836 - -
Seca5g04464 880 Gene3D Ribonuclease Inhibitor 194 294 IPR032675 -
Seca5g04464 880 Gene3D Ribonuclease Inhibitor 24 193 IPR032675 -
Seca5g04464 880 SUPERFAMILY L domain-like 32 312 - -
Seca5g04464 880 ProSitePatterns Protein kinases ATP-binding region signature. 654 676 IPR017441 GO:0005524
Seca5g04464 880 Pfam Protein tyrosine and serine/threonine kinase 650 735 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04464 Seca-Chr5 102175698 102182032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04464 725 880 Receptor kinase-like Gene Family AT5G49760 52.229 9.99e-42 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca5g04464 PK_Tyr_Ser-Thr 9.6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04464 - - gmx:100780344 1095.88