Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04461 ATGGGGGAAAGAATACTAGTACTCTTGGTGCTTTTGTTCAATTGTTTGCTGTTTGCAGTAGCACAAGAAGTTGCCAATGATTTTAGAGTTCTAATGTCTCTAAGGGATTCATGGAAGAGTTCAACTCCCAGTTGGGTTGGTTCTGATCCTTGCAGTGGTTGGGCTGGTATCAAGTGCAATAATAACTCAAGAGTTATTTCCATATCATTACCAGGCACTGATTTGACTGGCCAGCTTCCAGGAGATATTGGATCACTCTCTGAATTGGACACTCTGGATCTCTCATACAATAGGGGACTAACAGGACAGCTTCCACAAGAAATTGGAAATTTGAAGAAGCTATCAAAACTAATGCTTGTTAGTTGTGGTTTTACTGGTCCTATTCCAGATGAAATAGGATATCTACAACAGCTTGTTTACTTATCTTTAAACTCCAACAGCTTTGTGGGACCTATTCCCCCTTCTATTGGCCATCTTTCAAAACTTGATTGGCTAGATTTAACTGATAATCAGCTTGATGGACCCATTCCAGTATCCAGTGACACTACCCCTGGTCTTGATATGCTACTCAACACAAAGCACTTTCATCTTGGGAAGAATAAGCTTTCAGGAGAAATTCCTCCTCAACTTTTTAGCTCAAAAATGTCCCTCATACATGTGATTTTTGAGAGCAATCAACTCACTGGAGGCATTCCAGATACACTTGGACTTGTTAAGACCCTGATGGTGGTGCGCTTTGAAAATAATTTATTGGATGGACATGTGTCTCGGAACCTCAACAACCTTACCAATGTTACAGACCTGTTGTTGTCCAACAATAAGCTGCAAGGTTCCCTGCCAAATCTTACTGGGATGAACTCCCTAAAATACTTGGATTTGAGCAACAATTCCTTTGATCCGTCAGATTTTCCAACTTGGATTTCAAATCTGACAAATTTAGCAACATTACAAATGGAGAGTGTGAACCTTAATGGGAAAATTCCTGTTCAGTTGTTTAGCCTTGCCAATTTACAAAATATTATGCTTAAGGACAACAAGCTTGAAGGAACCTTGGATATCGGCACCAGCTACAGCAGAAAACTGAAACTTATTGATTTGCAGTCAAATTCAATTGAAGACTTTGAGCAACGAAACCAACTCCCTGTTATCACAATATTACTTGAGCACAACCCAATCTGTCAAGAAACAGGAGCCACAGGGACATACACATACTGCACCATGCACAATATCTTAGATACAGAACAGAAGAACTGTCTACCTGTTATTTGCAGTTCAGATCAGATCCTCAGTCCCAACTGCAAATGTGCATATCCATATACAGGAACTCTAACATTCAGAGCACCTTCCTTGTTTGACTGGAGAAACACATTTTCCCTGAAGGAAGATCTTTTGCAAGCTTTTCACTCCAATCATCTACCTGTGGATTCAATTTCTTTAATCAGTCATACTGATGATCCATTTCGTTATTTTGAGTTTACCATTCAAATCTTCCCTTCAGGCCAAGATCATTTCAACCAACAAGACATGTCTACTATAAGCTTTTTGCTTGGCAACCTAAGTACTATTAGACCATATACTTTTATTACTGACCAAGTTCAAGGACCAAAGGAGGCAAGTAACTCATCAAAAATTGGCATGATTATTGGAGCAGCAGTTGGTGGTTCTTCTATCCTGCTTGTGTTGTTAATCCTTGCAGGCTTCTATGCTTTCCGCCAGAAGAGAAGGGCAGAAAGAGCAATTTCAAAAAGCAATCCTTTTGGACACTGGGATTCAAGTAAAAGCAACTGTGGTATCCCTCAGCTAAAAGCTGCAAGGCAGTTCACTTTTAAAGAATTGAAGGAATACACAAACAATTTTTCACCAGCGAATGATATTGGATCAGGGGGTTATGGAAAGGTTTATCGGGGAACTCTTCCCAGTGGAGAACGGATAGCCATAAAACGAGCTCAAAAGGAATCAAAGCAGGGTGCACTGGAATTTAAAGCTGAGATTGAACTCCTTTCAAGGGTCCACCACAAGAATCTGGTAAGTCTTGTGGGATTCTGCTTTGAACGGGAAGAACAAATGCTGGTTTACGAGTTTATTCCAAATGGAACTTTGAGGGATATGATCTCAGCCATCAGTTCAGGAGCATCACTGAAGGGTTTTGTGAAGTTTGTGGACCTTGCAATGATGTGTGTTGAACACTCAGGAATTGACAGGCCTACAATGAATGATGTGGTTAAAGAAATTGAAGACATACTGCAGTCTGCTGGTTTGAACCCAGCATCTGAATCAGAAGGATCCACTCCATCTAGTTATAAATATTTAGAGGTAAGTATAGGGAGTTCCCACCATCCTTACAGCAATGAAATCTTTGATTCAAGTACAGAACATTTACAACCAAAAAGTGAGTCTAGTTAA 2403 0.4007 MGERILVLLVLLFNCLLFAVAQEVANDFRVLMSLRDSWKSSTPSWVGSDPCSGWAGIKCNNNSRVISISLPGTDLTGQLPGDIGSLSELDTLDLSYNRGLTGQLPQEIGNLKKLSKLMLVSCGFTGPIPDEIGYLQQLVYLSLNSNSFVGPIPPSIGHLSKLDWLDLTDNQLDGPIPVSSDTTPGLDMLLNTKHFHLGKNKLSGEIPPQLFSSKMSLIHVIFESNQLTGGIPDTLGLVKTLMVVRFENNLLDGHVSRNLNNLTNVTDLLLSNNKLQGSLPNLTGMNSLKYLDLSNNSFDPSDFPTWISNLTNLATLQMESVNLNGKIPVQLFSLANLQNIMLKDNKLEGTLDIGTSYSRKLKLIDLQSNSIEDFEQRNQLPVITILLEHNPICQETGATGTYTYCTMHNILDTEQKNCLPVICSSDQILSPNCKCAYPYTGTLTFRAPSLFDWRNTFSLKEDLLQAFHSNHLPVDSISLISHTDDPFRYFEFTIQIFPSGQDHFNQQDMSTISFLLGNLSTIRPYTFITDQVQGPKEASNSSKIGMIIGAAVGGSSILLVLLILAGFYAFRQKRRAERAISKSNPFGHWDSSKSNCGIPQLKAARQFTFKELKEYTNNFSPANDIGSGGYGKVYRGTLPSGERIAIKRAQKESKQGALEFKAEIELLSRVHHKNLVSLVGFCFEREEQMLVYEFIPNGTLRDMISAISSGASLKGFVKFVDLAMMCVEHSGIDRPTMNDVVKEIEDILQSAGLNPASESEGSTPSSYKYLEVSIGSSHHPYSNEIFDSSTEHLQPKSESS. 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04461 800 SUPERFAMILY Protein kinase-like (PK-like) 597 708 IPR011009 -
Seca5g04461 800 ProSiteProfiles Protein kinase domain profile. 619 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04461 800 FunFam Leucine-rich repeat protein kinase family protein 182 281 - -
Seca5g04461 800 Gene3D Phosphorylase Kinase; domain 1 590 694 - -
Seca5g04461 800 Pfam Protein tyrosine and serine/threonine kinase 623 712 IPR001245 GO:0004672|GO:0006468
Seca5g04461 800 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Seca5g04461 800 PANTHER RECEPTOR-LIKE PROTEIN 55 38 704 - -
Seca5g04461 800 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Seca5g04461 800 Gene3D Ribonuclease Inhibitor 183 396 IPR032675 -
Seca5g04461 800 FunFam Leucine-rich repeat family protein 26 181 - -
Seca5g04461 800 FunFam Leucine-rich repeat protein kinase family protein 587 694 - -
Seca5g04461 800 SUPERFAMILY L domain-like 44 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04461 Seca-Chr5 102152371 102157930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04461 6 708 Receptor kinase-like Gene Family AT1G79620 46.524 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca5g04461 PK_Tyr_Ser-Thr 7.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04461 - - gmx:100810323 1001.12