Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04460 ATGTCTAACCCCATCAAGGAGGAGCTTGTGTGCGTCACCGGCGCCAACGGCTTCATCGGTTCATGGCTGGTTCGAACCCTATTAGCGAATGAGAACCCACGCTACACCATTCACGCCACCATCTTCCCTGGCTCCGACCCTTCCCATCTCTTCACCCTCCACCCCGAAGCCAAATCCCGCCTCACTCTCTTCCCCGCCGACATCCTCGACGCCGCCGCCGTTTCCCGCGCCGTTGAAGGCTGCTCCGGCGTCTTCCACGTGGCCTCCCCCTGCACACTCGACGACCCCACAGACCCTCAAAAGGAGCTGGTCGAACCCGCAGTGCAGGGAACCCTAAACGTTCTAGAAGCCGCGAAGCGCGTCGGCGTGAGGCGCGTGGTTCTCACCTCCTCGATCTCCGCCATTGTGCCGAACCCTAAGTGGCCGGCGAACAAGGTCGTCGACGAGTCGTCGTGGACGGACGTGGAGTACTGCGAGTCGCGGCAGAAGTGGTACCCGGTGTCGAAGACGGAGGCGGAGAGGGCGGCGTGGGAGTTCAAGGAGAAGCACGGCGTCGACGTGGTGGCGATTCACCCTGCCACGTGTCTAGGGCCGTTGCTGCAGCCGTCGCTAAATGCTAGCTCCGCCGTGCTGCAGAGGCTGATGATGGGATCGAAGGACACGCAAGAGTGTTACTGGTTGGGTGCGGTGCATGTCAAGGACGTTGCAAAAGCTCATGTTTTGCTCTATGAGACTCCAACTGCTGCTGGTAGATATCTATGTACCAATGGTATCTACCAGTTTTCTAGTTTTGCTGACACTGTCTCTGATTTGTACCCTGATTTCCCTATTCACAGCCAAAAGCACAAGCTGAAGTCTCTTATGCTAGTCATATTTACCAACCTTGTCACCATTTACATCTTCACTGGTCCATTTAGTTTTATGTATCACTCTTCCTTGAGTCCTGGTTACTCAAACTCTATCTTGCAGGAACTCAACTCTACCAAAGCTCAACTTGCAGCCAGTCACTCACTCTTGTCTGAGCTACAGCACAGACTCAACTCTACTAACTTACTTGTCCAGGCCTTGCTTATTGATCTTACCCGCCAACAAGACAAGCAATTTAACAGTGCAGATCAGAACCCTGTGAGTGTGAAGCTTGGAAAAGGTGAGCTCACTATTGCACTCGGTTCTCACAAGCTCCCTTTTGGACACTCACCAAGGATAGGATCAGATGAGATTCACATGCCTGTTGGCACAGCCTGCTTGAAGTTCCATGAGGAGCTAAACCAATACATGACATATGACATTGGAGGGGAATGCCCTGTAGATGATGTACTTGCACAAAGGCTCATGCTCAAAGGGTGTGAACCACTCCCTCGTAGGAGATGCCACCCCAAGTCTCCTACAAATTATGTAGAGCCAAAGCCTTTGCCAGATAGCCTTTGGACAACCCCACCAGACACCAGCATTATCTGGGATCCTTATACTTGTAAAAGCTACCAGTGCCTCATTGACAGAGAGAATAAGCCAGGGTTGTTTGACTGCAAAGGTTGCTTTGATTTACAGGGCAAAGAGAAGAGTAGGTGGCTCTTTGATGATGGTGGACTTAATTTTGGAATGGATCAAGTTCTTGCAACAAAAACTGCAGGAACCATTCGTATTGGACTTGACATTGGTGGTGGAACTGGAACATTTGCTGCCAGAATGAGGGAAAGGGATGTAACAATCATTACAAGCACACTGAATTTGGATGGTCCATTCAACAACATGATTGCATCAAGGGGTTTAATACCAATGCATATTAGCATCTCTCAAAGGTTTCCTTTCTTTGAAAACACAATGGATATTGTGCACTCCATGCATGTCATAGGCAACTGGATGCCAGACACCATGCTTGAGTTTGTGTTGTATGATATATACAGGGTGTTGAGGCCAGGGGGTCTTTTCTGGCTTGATCATTTCTTCTGCTTTGGTTCACAAGTCAACAAAACTTATGTGCCAATGTTAGATCGAGTTGGATTCAATAAATTGAGATGGCATGTTGGAATGAAACTTGATAATGGGGTTCACAAGAATGTATGGTACATTTCTGCTCTGATGGAGAAACCAATGATTTGA 2100 0.4938 MSNPIKEELVCVTGANGFIGSWLVRTLLANENPRYTIHATIFPGSDPSHLFTLHPEAKSRLTLFPADILDAAAVSRAVEGCSGVFHVASPCTLDDPTDPQKELVEPAVQGTLNVLEAAKRVGVRRVVLTSSISAIVPNPKWPANKVVDESSWTDVEYCESRQKWYPVSKTEAERAAWEFKEKHGVDVVAIHPATCLGPLLQPSLNASSAVLQRLMMGSKDTQECYWLGAVHVKDVAKAHVLLYETPTAAGRYLCTNGIYQFSSFADTVSDLYPDFPIHSQKHKLKSLMLVIFTNLVTIYIFTGPFSFMYHSSLSPGYSNSILQELNSTKAQLAASHSLLSELQHRLNSTNLLVQALLIDLTRQQDKQFNSADQNPVSVKLGKGELTIALGSHKLPFGHSPRIGSDEIHMPVGTACLKFHEELNQYMTYDIGGECPVDDVLAQRLMLKGCEPLPRRRCHPKSPTNYVEPKPLPDSLWTTPPDTSIIWDPYTCKSYQCLIDRENKPGLFDCKGCFDLQGKEKSRWLFDDGGLNFGMDQVLATKTAGTIRIGLDIGGGTGTFAARMRERDVTIITSTLNLDGPFNNMIASRGLIPMHISISQRFPFFENTMDIVHSMHVIGNWMPDTMLEFVLYDIYRVLRPGGLFWLDHFFCFGSQVNKTYVPMLDRVGFNKLRWHVGMKLDNGVHKNVWYISALMEKPMI. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04460 699 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 548 670 IPR029063 -
Seca5g04460 699 Gene3D - 2 298 - -
Seca5g04460 699 CDD FR_SDR_e 10 289 - -
Seca5g04460 699 Gene3D Vaccinia Virus protein VP39 529 690 IPR029063 -
Seca5g04460 699 FunFam Dihydroflavonol reductase 7 295 - -
Seca5g04460 699 Pfam Methyltransferase domain 550 644 IPR013216 GO:0008168
Seca5g04460 699 Pfam NAD dependent epimerase/dehydratase family 10 248 IPR001509 -
Seca5g04460 699 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 278 IPR036291 -
Seca5g04460 699 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 281 698 - -
Seca5g04460 699 CDD AdoMet_MTases 550 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04460 Seca-Chr5 102146862 102151569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04460 5 278 Monolignol Biosynthesis Gene Families AT2G02400 67.883 4.14e-137 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04460 - - gmx:102664598 742.265