LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g04460	ATGTCTAACCCCATCAAGGAGGAGCTTGTGTGCGTCACCGGCGCCAACGGCTTCATCGGTTCATGGCTGGTTCGAACCCTATTAGCGAATGAGAACCCACGCTACACCATTCACGCCACCATCTTCCCTGGCTCCGACCCTTCCCATCTCTTCACCCTCCACCCCGAAGCCAAATCCCGCCTCACTCTCTTCCCCGCCGACATCCTCGACGCCGCCGCCGTTTCCCGCGCCGTTGAAGGCTGCTCCGGCGTCTTCCACGTGGCCTCCCCCTGCACACTCGACGACCCCACAGACCCTCAAAAGGAGCTGGTCGAACCCGCAGTGCAGGGAACCCTAAACGTTCTAGAAGCCGCGAAGCGCGTCGGCGTGAGGCGCGTGGTTCTCACCTCCTCGATCTCCGCCATTGTGCCGAACCCTAAGTGGCCGGCGAACAAGGTCGTCGACGAGTCGTCGTGGACGGACGTGGAGTACTGCGAGTCGCGGCAGAAGTGGTACCCGGTGTCGAAGACGGAGGCGGAGAGGGCGGCGTGGGAGTTCAAGGAGAAGCACGGCGTCGACGTGGTGGCGATTCACCCTGCCACGTGTCTAGGGCCGTTGCTGCAGCCGTCGCTAAATGCTAGCTCCGCCGTGCTGCAGAGGCTGATGATGGGATCGAAGGACACGCAAGAGTGTTACTGGTTGGGTGCGGTGCATGTCAAGGACGTTGCAAAAGCTCATGTTTTGCTCTATGAGACTCCAACTGCTGCTGGTAGATATCTATGTACCAATGGTATCTACCAGTTTTCTAGTTTTGCTGACACTGTCTCTGATTTGTACCCTGATTTCCCTATTCACAGCCAAAAGCACAAGCTGAAGTCTCTTATGCTAGTCATATTTACCAACCTTGTCACCATTTACATCTTCACTGGTCCATTTAGTTTTATGTATCACTCTTCCTTGAGTCCTGGTTACTCAAACTCTATCTTGCAGGAACTCAACTCTACCAAAGCTCAACTTGCAGCCAGTCACTCACTCTTGTCTGAGCTACAGCACAGACTCAACTCTACTAACTTACTTGTCCAGGCCTTGCTTATTGATCTTACCCGCCAACAAGACAAGCAATTTAACAGTGCAGATCAGAACCCTGTGAGTGTGAAGCTTGGAAAAGGTGAGCTCACTATTGCACTCGGTTCTCACAAGCTCCCTTTTGGACACTCACCAAGGATAGGATCAGATGAGATTCACATGCCTGTTGGCACAGCCTGCTTGAAGTTCCATGAGGAGCTAAACCAATACATGACATATGACATTGGAGGGGAATGCCCTGTAGATGATGTACTTGCACAAAGGCTCATGCTCAAAGGGTGTGAACCACTCCCTCGTAGGAGATGCCACCCCAAGTCTCCTACAAATTATGTAGAGCCAAAGCCTTTGCCAGATAGCCTTTGGACAACCCCACCAGACACCAGCATTATCTGGGATCCTTATACTTGTAAAAGCTACCAGTGCCTCATTGACAGAGAGAATAAGCCAGGGTTGTTTGACTGCAAAGGTTGCTTTGATTTACAGGGCAAAGAGAAGAGTAGGTGGCTCTTTGATGATGGTGGACTTAATTTTGGAATGGATCAAGTTCTTGCAACAAAAACTGCAGGAACCATTCGTATTGGACTTGACATTGGTGGTGGAACTGGAACATTTGCTGCCAGAATGAGGGAAAGGGATGTAACAATCATTACAAGCACACTGAATTTGGATGGTCCATTCAACAACATGATTGCATCAAGGGGTTTAATACCAATGCATATTAGCATCTCTCAAAGGTTTCCTTTCTTTGAAAACACAATGGATATTGTGCACTCCATGCATGTCATAGGCAACTGGATGCCAGACACCATGCTTGAGTTTGTGTTGTATGATATATACAGGGTGTTGAGGCCAGGGGGTCTTTTCTGGCTTGATCATTTCTTCTGCTTTGGTTCACAAGTCAACAAAACTTATGTGCCAATGTTAGATCGAGTTGGATTCAATAAATTGAGATGGCATGTTGGAATGAAACTTGATAATGGGGTTCACAAGAATGTATGGTACATTTCTGCTCTGATGGAGAAACCAATGATTTGA	2100	0.4938	MSNPIKEELVCVTGANGFIGSWLVRTLLANENPRYTIHATIFPGSDPSHLFTLHPEAKSRLTLFPADILDAAAVSRAVEGCSGVFHVASPCTLDDPTDPQKELVEPAVQGTLNVLEAAKRVGVRRVVLTSSISAIVPNPKWPANKVVDESSWTDVEYCESRQKWYPVSKTEAERAAWEFKEKHGVDVVAIHPATCLGPLLQPSLNASSAVLQRLMMGSKDTQECYWLGAVHVKDVAKAHVLLYETPTAAGRYLCTNGIYQFSSFADTVSDLYPDFPIHSQKHKLKSLMLVIFTNLVTIYIFTGPFSFMYHSSLSPGYSNSILQELNSTKAQLAASHSLLSELQHRLNSTNLLVQALLIDLTRQQDKQFNSADQNPVSVKLGKGELTIALGSHKLPFGHSPRIGSDEIHMPVGTACLKFHEELNQYMTYDIGGECPVDDVLAQRLMLKGCEPLPRRRCHPKSPTNYVEPKPLPDSLWTTPPDTSIIWDPYTCKSYQCLIDRENKPGLFDCKGCFDLQGKEKSRWLFDDGGLNFGMDQVLATKTAGTIRIGLDIGGGTGTFAARMRERDVTIITSTLNLDGPFNNMIASRGLIPMHISISQRFPFFENTMDIVHSMHVIGNWMPDTMLEFVLYDIYRVLRPGGLFWLDHFFCFGSQVNKTYVPMLDRVGFNKLRWHVGMKLDNGVHKNVWYISALMEKPMI.	700

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g04460	699	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	548	670	IPR029063	-
	Seca5g04460	699	Gene3D	-	2	298	-	-
	Seca5g04460	699	CDD	FR_SDR_e	10	289	-	-
	Seca5g04460	699	Gene3D	Vaccinia Virus protein VP39	529	690	IPR029063	-
	Seca5g04460	699	FunFam	Dihydroflavonol reductase	7	295	-	-
	Seca5g04460	699	Pfam	Methyltransferase domain	550	644	IPR013216	GO:0008168
	Seca5g04460	699	Pfam	NAD dependent epimerase/dehydratase family	10	248	IPR001509	-
	Seca5g04460	699	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	6	278	IPR036291	-
	Seca5g04460	699	PANTHER	S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED	281	698	-	-
	Seca5g04460	699	CDD	AdoMet_MTases	550	650	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g04460	Seca-Chr5	102146862	102151569	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g04460	5	278	Monolignol Biosynthesis Gene Families	AT2G02400	67.883	4.14e-137	404

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g04460	-		-	gmx:102664598	742.265

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