Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04459 ATGTCCACTAAGCTTGTACTTGGTTTGCTTGTTCTCTTTAGTTCTTTGCCTCTTCCCTTTGCAGAGGTTTGCCCAAGGAGTTTTAACTGTGGAGTCCTCGGGGAGTTATCCTTCCCATTCACCAATTCACCAAACTCACAATGTGGTTTGTATGTAAGGGGATGTGATGATGAAGGTGGAGCCATAGATGTTCATTTGGGAGATGAAAATGAAAACCTAACATGGCTTGAAATTGAAAGCATAGGCAACGCCTCTCAATCTCAAATTACTTCGCTCCATGTCAAAAGTCGTCAACTTGACAAGAAGATGCGCGACTCCTCCAGAGATTGCAGAATGGAAGATTACAATATTACCCTTCCCCCAGCGACTCCTATAATGTCATTTGAGAAGGAATTTCAATACACACTGGCTCTGTGTAGGTGCAACCGAAGCCTCAACATCACTCCCCCTGAATACTTTCAGAACAATGAACTTCTACTCTGTGGTGAATTTTTGGAGTATTACCTCTACTATGACCATGAACGTGGGTCCGTGAATGTGCTTGTGGTGGCAACAGCTACTTCAGCTGCTGTGGTTGCAATAATGCTTATGGTCTTGGTATGCTGTTTAAGAAGAAAAGTCACCTCTGCATCTATTTTCTTTTGGAAGGGTGAAAATCCAACCCATCAAAACATTGAGATCTTTTTGAAGACACATGAATTCCTTTTAACCAAAAGGTACACTTATTCTGAGATAAGACAGATGACAGACTCCTTCAAAAACAAACTAGGCCAAGGGGGTTATGGAAGTGTATACAAAGGAAAATTACCTGATGGAAGACTTGTTGCAGTGAAGGTTTTAAATGAATTAAAAGGTAATGGTGAAGAATTCATCAATGAAGTTGCAAGTATCAGCCAAACTTCTCATGTTAACATAGTTAGTCTCTTTGGATTTTGTTTTCAAGGTTCAAAGAGAGCTCTAGTTTATGAGTTCATGACTAATGGTTCACTTGAAAAATTTACATATGAAAAGAATGATGCAATGGTTGATGGCCAATTAGATTGCAAGACTTTACATGACATTGCAATTGGTACTGCTAGGGGTTTAGAGTATCTACACAGAGGTTGCAACACTAGAATCTTACATTTTGACATCAAACCTCACAATATATTACTTGATGCAGACTTTTGTCCAAAGATTTCAGATTTTGGACTTGCAAAAATATGCACAAGAAAGGAGAGTATTGTTTCCTTGTGGGGTACAAGAGGAACTGCAGGGTATATTGCTCCTGAGGTATTTTCTAGAAATTTTGGGGCTGTATCACATAAATCAGATGTTTATAGTTTTGGAATGATGGTTTTAGAAATGGTTGGAGGAAGGAAAAAGGGTAGTCATGTGGAAGTTGAGAGTTCTAGTGAAATGTATTTTCCAAATTGGATTTACAAATGCATAGAATTAAACCAAGAACTTGAATTGAGATGTATTAAAAGTACAAATGATTATGAGGTGGCAAAGAAAATGATTGTGGTAAGCTTATGGTGCATACAGACCGACCCATCAGCTCGGCCAGCTATGAGTAAAGTGGTGGATATGTTAGAAGGAAGCCTTGAGTCATTGGAAATTCCACCCAAACCTTTTTTATGTTCGCCAAAAACATCTCCAGCTCAGTATTAG 1653 0.3884 MSTKLVLGLLVLFSSLPLPFAEVCPRSFNCGVLGELSFPFTNSPNSQCGLYVRGCDDEGGAIDVHLGDENENLTWLEIESIGNASQSQITSLHVKSRQLDKKMRDSSRDCRMEDYNITLPPATPIMSFEKEFQYTLALCRCNRSLNITPPEYFQNNELLLCGEFLEYYLYYDHERGSVNVLVVATATSAAVVAIMLMVLVCCLRRKVTSASIFFWKGENPTHQNIEIFLKTHEFLLTKRYTYSEIRQMTDSFKNKLGQGGYGSVYKGKLPDGRLVAVKVLNELKGNGEEFINEVASISQTSHVNIVSLFGFCFQGSKRALVYEFMTNGSLEKFTYEKNDAMVDGQLDCKTLHDIAIGTARGLEYLHRGCNTRILHFDIKPHNILLDADFCPKISDFGLAKICTRKESIVSLWGTRGTAGYIAPEVFSRNFGAVSHKSDVYSFGMMVLEMVGGRKKGSHVEVESSSEMYFPNWIYKCIELNQELELRCIKSTNDYEVAKKMIVVSLWCIQTDPSARPAMSKVVDMLEGSLESLEIPPKPFLCSPKTSPAQY. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04459 550 Pfam Protein kinase domain 253 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04459 550 FunFam PR5-like receptor kinase 325 537 - -
Seca5g04459 550 FunFam serine/threonine-protein kinase PBS1-like 221 324 - -
Seca5g04459 550 PANTHER RUST RESISTANCE KINASE LR10-RELATED 216 542 IPR045874 GO:0004672
Seca5g04459 550 Gene3D Transferase(Phosphotransferase) domain 1 325 534 - -
Seca5g04459 550 SMART serkin_6 250 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04459 550 Gene3D Phosphorylase Kinase; domain 1 226 324 - -
Seca5g04459 550 SUPERFAMILY Protein kinase-like (PK-like) 230 526 IPR011009 -
Seca5g04459 550 ProSiteProfiles Protein kinase domain profile. 250 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04459 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 373 385 IPR008271 GO:0004672|GO:0006468
Seca5g04459 550 ProSitePatterns Protein kinases ATP-binding region signature. 256 278 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04459 Seca-Chr5 102143548 102145970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04459 188 540 Receptor kinase-like Gene Family AT4G18250 52.342 6.02e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca5g04459 Pkinase 5.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04459 - - gmx:100786495 524.628