Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04457 ATGGAAGATACCACTCTCTGCTGCGAACATTTGCCAGATGGGGAATGCATTGAAGTTCATAAAGACGAAGATGGTGCACTAATTGAGTTAGATTGTCAAAATGATTTTGCTGAAGGAAGAAAGGAGTTTGTTGCACCTGCTGTCGGAATGGAGTTTGAATCTTATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAGGTGGGATTTCGTGTAAGGGTGAAGAATTCATGGTTTAAGCGAAATAGCAGAGAAAAAAATGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAACAAAAGATGTTAATCATTTGAGAAAAGAGACAAGAACTGGTTGTCCTGCAATGATAAGGATGAGGTTGGCGGAGTCTCAAAGATGGAGGATACTTGAGGTTACACTTGAACACAACCATGTCTTAGGTGCTAAGATACACGAATCGATTAAGAAGATGGGAACTGGAACTAAAAGGAAGTCATTGCCTAGTTCTTATGCTGAGGTGCAAACAATCAAGTTATACCGTGCACTTGTCATAGATGCAGGAGGTAATGGTAATTCAAACTCCAGTGCAAGAGATGATAGAACTTCCTCTGAATTTTCTAATAAGTTGAACCTTAAGAAAGGTGACACACAAGCCATTTATAATTTCCTCTGCCGTATGCAATTGACTAATCCAAACTTCTTTTATTTGATGGATTTCAATGATGAAGGGCATCTGAGAAATGCATTCTGGGCTGATGCTAGGTCCAGGGCTGCATGTGGTTATTTTGGAGATGTTATTTATTTTGACAACACATATTTGTCAAGCAAATATGAAATCCCTCTTGTGGCTTTCATTGGAATAAATCACCATGGGCAATCAGTGTTATTGGGCTGTGGCCTGCTTGCAGGCGAAACAACAGAGTCTTATATATGGTTGTTTAGAGCGTGGGTTACATGTATGTCAGGATGTTCTCCCCAAACTATTATTACAGATAGGTGCAAGGCTTTGCAGAGTGCAATTGTAGAAGTTTTTCCTAGATCTCATCATTGTTTTGGCTTGTCATTAATTATGAAAAAAATACCAGAAAAATTGGGATGGTTGCGCAATTATGATGCTATCAGGAAAGCACTGATTAAAGCAGTTTATGAGACGTTGAAAGTGATTGAATTTGAAGCAGCATGGAGATTCATGATTCAACATTTTGGAGTCAGTGAACATGAGTGGCTTCGTTCTCTATATGAAGATCGAGTGCATTGGGCACCGGTATATTTGAAGGACACTTTTTTTGCTGGAATGTCTGCAGCACGCCCTGGTGAGAGCATTAGTCCATTTTTTGATAAGTATGTGCACAAACAGACTCCTTTGAAGGAGTTTCTTGATAAGTATGAATTAGCCCTCCATAAGAAGCACAAGGAAGAATCTTTTTCAGATATTGAATCAAGAAGCTCAAGCCCCTTGCTGAAAACAAGATGTTCTTTTGAATCACAGCTCTCTAGAATGTACACAAGAGAAATATTCATGAAATTCCAATTTGAAGTGGAAGAAATGTATTCGTGTTTTGGTACAACACAATTACATGTGGATGGCCACATTATAATTTTCTTGGTCAAGGAGCGTGTTTTGATTGAGGGAAACAGAAGGGAAATTAAGGATTTTGAAGTTTTGTACAGTAGGACAGCAGGTGAAGTTCGTTGCATCTGCAGTTGCTTTAACTTTTATGGATATTTATGTCGGCATGCACTGTGTGTGCTCAATTTTAATGGGGTGGAAGAGATACCTTACAAATACATTCTTTCACGGTGGAAGAAAGATTACAAGCGCCTTTATGTTCCTGATCACAGTTCTGGTAGTGCTGATGATACTAACCGTATTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGAATAATTTCTCTAGATCATTACAATGTAGCGTTGCAAGCTTTTGAAGAGTCACTGAGTAAGGTTCATGAGATACATGACAGATCCTCAAACAGTGAAGAACTACTTGAGGTTGAGGACGAGGGCAATGGGCTTGAGAATGACTGTGGTCATTTATTTGAGATTGATGGAAGTGAACATGAAAATGGTAGGGAGGAAACAACAGTAGTTGATAGTCATAGTAGAGAATCTCAAGGAAAAGACTACACCCCACCAGTTGTGGGAATGGAGTTTGATACTTATGATGATGCCTACAACTATTACAATAGCTATGCCAAGGAAATTGGATTTGCTATTCGGGTTAAATCTTCATGGGCCAATCGTAACAGTAAAGAGAAGCGTGGTGCTGTGCTGTGCTGCAACTGTGAGGGTTTCAAAACAATTAAAGAAGCAAATAGTCATAGGAAAGAAACAAGAACAGGCTGTCTAGCAATGATTAGATTGAGATTAGCGGAATCTAACAGGTGGAGGGTGGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAGAGAGCACAAAACTCTAAATCACACAAGAGGATGGACAGTGGGGCTAAAAGAAAAGTTGAGCCAACTCTGGATGTTGAAGTACGAACAATCAAGTTATATCGAATGCCAGTTGTAGATGCATCAGATTATGGGAGCTCAAATTCTAATGAAGGTGGAACTAACAACAACATTAATTTTTCCAGGCGTTTGAAACTTAAAAAAGGTGATCCTGAACTTATTTCAAATTACTTCTGCCGCAGTCAAATGATGAATCCTAATTTTTTCTATGTGATGGATCTGAATGATGATGGACAACTGAGGAACATATTTTGGATTGATTCGAGATCAAGGGCTGCATATAGTTATTTTGGTGATGTGGTTGCAATTGACTCAACATGTTTGTCAAACAATTATGAGATTCCACTTGTTGCATTTGTTGGCATTAATCACCATGGGCAATCTATTTTGCTAGGATGTGGCCTGCTTGCAGATGAAACATTTGAAACATATATTTGGTTATTTAGGGCATGGCTTACATGTATGTCTGGTCGCCCTCCACAGACTATTATAACAAACCAGTGTAAGGCCTTGCAAAGTGCAATAGCAGAGGTTTTCCCAAGAGCGCACCACAGAATTTATCTATCACAAGTGATACAGAGCATTCTTGGATGTTTGGTGCAATTTCAGGAATATGAGGCATTTCAGATGGCACTGACTAAAGTGATATGTGACCCTAAAACAGTAGATGAATTTGAAAGGGATTGGGATGATATGACCCAGCATTTTGGAATAAGATATCATGAAAAACTCCAAACCTTGCATGTGGAACGAGAGCATTGGGCTCCTGTGTACTCCAAGGACACATTTTTTGCTGGAATTTCTGATTATGAAAAGGGTGAGTCTTTGGTTCCCTTTTTTAAGGGTCACGTGCATCAACAAACTTCTTTAAAAGAATTTTTTGAGATTTATGAATTAGTTCAGCAAAAAAAGCACAAAACCGAAGCTCTTGATGATCTTGAGTCACGTGATTCAAGCCCATTACTGAAGACAGGATGCTATTATGAGTTGCAACTCTCTAAATTGTACACAAATGCAATATTCAGGAAGTTCCAAGATGAGGTGGTGATGATGTCCTCTTGTTTCAGCGCCACACCAATTCAAACAAACGGGTCTACAATGACATACATGGTAAAAGAACGTCAAGGGGAAGAACCTGTAAGAGACACTAGGCTTTTTGAAGTCATGTATGATAAAGCTGGAGCAGAAGTACGTTGCATCTGTGGTTGCTTTAACTTCAAAGGCTACCTGTGCAGACATGCCTTGTATATCCTTAATTATAATGGTTTGGAGGAAATTCCATGTCAATATATTTTGTCAAGATGGAGGAAGGATTTTAAGCGATTGTATGTACCTCAGCTCAGCTCTGATAATGTTGATATTAGCAACCCAGTTCAGTGTTATGATCATTTGTACAAACGTGCTATGCAAATAGTTGAAGAAGGGATGATATCCCAAGATCATTATATGGTTTCTTGGCAGGCATTTAAAGAGTCTTTGAATAAGATCCGCCTTGTAGCAGACAAAATTGAATAA 4038 0.3898 MEDTTLCCEHLPDGECIEVHKDEDGALIELDCQNDFAEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKNGAVLCCSSQGFKRTKDVNHLRKETRTGCPAMIRMRLAESQRWRILEVTLEHNHVLGAKIHESIKKMGTGTKRKSLPSSYAEVQTIKLYRALVIDAGGNGNSNSSARDDRTSSEFSNKLNLKKGDTQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNAFWADARSRAACGYFGDVIYFDNTYLSSKYEIPLVAFIGINHHGQSVLLGCGLLAGETTESYIWLFRAWVTCMSGCSPQTIITDRCKALQSAIVEVFPRSHHCFGLSLIMKKIPEKLGWLRNYDAIRKALIKAVYETLKVIEFEAAWRFMIQHFGVSEHEWLRSLYEDRVHWAPVYLKDTFFAGMSAARPGESISPFFDKYVHKQTPLKEFLDKYELALHKKHKEESFSDIESRSSSPLLKTRCSFESQLSRMYTREIFMKFQFEVEEMYSCFGTTQLHVDGHIIIFLVKERVLIEGNRREIKDFEVLYSRTAGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPYKYILSRWKKDYKRLYVPDHSSGSADDTNRIQWSNQLFRSALQVVEEGIISLDHYNVALQAFEESLSKVHEIHDRSSNSEELLEVEDEGNGLENDCGHLFEIDGSEHENGREETTVVDSHSRESQGKDYTPPVVGMEFDTYDDAYNYYNSYAKEIGFAIRVKSSWANRNSKEKRGAVLCCNCEGFKTIKEANSHRKETRTGCLAMIRLRLAESNRWRVDEVKLEHNHSFDPERAQNSKSHKRMDSGAKRKVEPTLDVEVRTIKLYRMPVVDASDYGSSNSNEGGTNNNINFSRRLKLKKGDPELISNYFCRSQMMNPNFFYVMDLNDDGQLRNIFWIDSRSRAAYSYFGDVVAIDSTCLSNNYEIPLVAFVGINHHGQSILLGCGLLADETFETYIWLFRAWLTCMSGRPPQTIITNQCKALQSAIAEVFPRAHHRIYLSQVIQSILGCLVQFQEYEAFQMALTKVICDPKTVDEFERDWDDMTQHFGIRYHEKLQTLHVEREHWAPVYSKDTFFAGISDYEKGESLVPFFKGHVHQQTSLKEFFEIYELVQQKKHKTEALDDLESRDSSPLLKTGCYYELQLSKLYTNAIFRKFQDEVVMMSSCFSATPIQTNGSTMTYMVKERQGEEPVRDTRLFEVMYDKAGAEVRCICGCFNFKGYLCRHALYILNYNGLEEIPCQYILSRWRKDFKRLYVPQLSSDNVDISNPVQCYDHLYKRAMQIVEEGMISQDHYMVSWQAFKESLNKIRLVADKIE. 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04457 1345 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Seca5g04457 1345 SMART 26again6 1238 1265 IPR006564 GO:0008270
Seca5g04457 1345 SMART 26again6 560 587 IPR006564 GO:0008270
Seca5g04457 1345 Pfam MULE transposase domain 262 356 IPR018289 -
Seca5g04457 1345 Pfam MULE transposase domain 941 1027 IPR018289 -
Seca5g04457 1345 ProSiteProfiles Zinc finger SWIM-type profile. 1227 1263 IPR007527 GO:0008270
Seca5g04457 1345 MobiDBLite consensus disorder prediction 817 840 - -
Seca5g04457 1345 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 708 1338 IPR031052 GO:0006355
Seca5g04457 1345 MobiDBLite consensus disorder prediction 697 715 - -
Seca5g04457 1345 MobiDBLite consensus disorder prediction 697 721 - -
Seca5g04457 1345 Pfam SWIM zinc finger 1238 1256 IPR007527 GO:0008270
Seca5g04457 1345 Pfam SWIM zinc finger 539 581 IPR007527 GO:0008270
Seca5g04457 1345 Pfam FAR1 DNA-binding domain 60 143 IPR004330 -
Seca5g04457 1345 Pfam FAR1 DNA-binding domain 736 820 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04457 Seca-Chr5 102128388 102137044 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g04457 MULE 2.3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04457 K17604 - gmx:100796448 2443.69