Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04449 ATGGAGGATCAGGCTGTTTTAGGAGCTGGAGCATCAGTTGGCAGAGAGGAAGAGGAAGATGAGTTTTGTAGTTGTTGTGAAGATGAAGATGAAGAAGCATGGAAAGAAACTGAGGAGCTGTTGGTGGTGGAAGGGTTGAAGGATGAGCTTGATGAGTTTTCAGTAAAAATGTTCTTTAAGGGGTTGTCAATAGCTGGGGTTGAAAATTCAAGTTCTGGGTTTTCTGGAATTGGAGTGTTCATGGAAAGATCATCAAGTCTTCCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCAGAGGAGCCCTTGGTTGACTACTTGGCACTCATGGATGGCTTGCTGGAAGCTGCTCAGAACAAGATCCGCCAGGTTCATGCTTTCACAGATTCTGAGTTGCTGTACGATCAGGTTAGCAATTCAGTATTTAATCTTAACGTTTCTTTGTTTTATGATCTTTACATAACATCTGAGAAAGATTTGGACATGCCACTTTTGATGGCACTGAGAGAAAGGATTCTGGAACATGTCAATAATTTTGAAACTTTTGTTCTGAAGCTTATACCTAGTACTGATCTTGAGCATCCACTGCAGTTAGCTAAAGTAGCTATTGGGCTTGTTACTTTCCCTGTAAATGGTGAGACATTACTTGAGAACTGTTCTATTTGTTGTGATGACAAGCCAGTGCCAATTATGATTACCTTGAAATGTTCACACACATTCTGTTCGCATTGTTTGAGGTCCTATGCTGATGGTAAAGTACAATTTTGTCAAGTTCCTATAAGATGCCCTCAACCAGGATGCAAATATTGCATCTCTGTAAATGAGTGCAGGACTTTTCTTCCATTCACCTCCTTTGAATCTTTTGAGAAAGCCCTTTCAGAAGCATGTATTGTACAGTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCGTGAATGTTTATCCGCTAGGGCCAGTTCATCTAGTCAGTCAAACAATTCTTGTGTTGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTGAGGTTCCTTGGCATTGTTCTATGAGCTGTGAAGAATACCAGAATCTGCCAGAGGAGGAAAGAGATGCTTCTGACATTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGAAGAATGATTGAGCTTACTCATGGTTGTTACCACATGACATGCTGGTGTGGCCATGAGTTCTGCTATTCTTGTGGTGCGGAATACAGGAATGGCCAACAGACATGTCAGTGTGCATTTTGGGATGAAGACAACTCTGAAGACTCCTTAACACACTCCCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCTCTGTGATCATGGATGCATACTCAGACCAAGAACGATCACAGCTCGCGCTTATACAAAGGTTCCTAGCTGGTGGTTTTAGTCTTAGTGACCATAATCCCTACCAATCTCCTCCCCGTTGTACAGATTCCTATGCAGACACCATGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATTCAGTGA 1605 0.4187 MEDQAVLGAGASVGREEEEDEFCSCCEDEDEEAWKETEELLVVEGLKDELDEFSVKMFFKGLSIAGVENSSSGFSGIGVFMERSSSLPAIRVQKKLDFYAEEPLVDYLALMDGLLEAAQNKIRQVHAFTDSELLYDQVSNSVFNLNVSLFYDLYITSEKDLDMPLLMALRERILEHVNNFETFVLKLIPSTDLEHPLQLAKVAIGLVTFPVNGETLLENCSICCDDKPVPIMITLKCSHTFCSHCLRSYADGKVQFCQVPIRCPQPGCKYCISVNECRTFLPFTSFESFEKALSEACIVQSDRIYCPFPNCSVLLDPRECLSARASSSSQSNNSCVECPVCQRFICVDCEVPWHCSMSCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRNGQQTCQCAFWDEDNSEDSLTHSLQESEQWAWETFNSLSVIMDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYADTMKDLHQLPWLERFVSVISDNYYEDYIQ. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04449 534 MobiDBLite consensus disorder prediction 1 20 - -
Seca5g04449 534 FunFam RBR-type E3 ubiquitin transferase 357 482 - -
Seca5g04449 534 CDD Rcat_RBR_unk 385 421 - -
Seca5g04449 534 Gene3D - 356 481 - -
Seca5g04449 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 299 IPR013083 -
Seca5g04449 534 Pfam IBR domain, a half RING-finger domain 379 428 IPR002867 GO:0008270
Seca5g04449 534 Pfam IBR domain, a half RING-finger domain 289 359 IPR002867 GO:0008270
Seca5g04449 534 FunFam RBR-type E3 ubiquitin transferase 55 207 - -
Seca5g04449 534 CDD BRcat_RBR_unk 301 362 - -
Seca5g04449 534 ProSitePatterns Zinc finger RING-type signature. 237 246 IPR017907 -
Seca5g04449 534 Gene3D - 56 206 IPR036397 GO:0003676
Seca5g04449 534 SUPERFAMILY RING/U-box 372 436 - -
Seca5g04449 534 SMART ibrneu5 287 359 IPR002867 GO:0008270
Seca5g04449 534 SMART ibrneu5 369 428 IPR002867 GO:0008270
Seca5g04449 534 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 111 480 IPR031127 GO:0004842|GO:0016567
Seca5g04449 534 SUPERFAMILY RING/U-box 218 293 - -
Seca5g04449 534 ProSiteProfiles TRIAD supradomain profile. 216 434 IPR044066 -
Seca5g04449 534 ProSiteProfiles Zinc finger RING-type profile. 220 264 IPR001841 -
Seca5g04449 534 FunFam RBR-type E3 ubiquitin transferase 215 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04449 Seca-Chr5 102042858 102046872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04449 54 419 C3H Transcription Factor Family AT2G19610 25.459 1.51e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04449 - - gmx:100783040 884.789