Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04444 ATGGAAGCTGGTGGCGGTAACCGCGGAAAAGGGATTCAGCAGCCGTCTGAGGAGGTGACTCTGCAACCAGAATGGAGGCGGCAAAGTGGCTCCGGCGGAAGAGGACCCGACGTGATTCTCCAACCGGAATGGAGGCGACAGAGGCCTAGTGGTTCTCCTTCTCCTAATCCTCCTGAACCTGCTAGTGAAGCACGCAAGGAGGAAGTGCTTCTCCAACCAGAATGGAGGCGTTCAAAGCCAAGTTCAAGTGTTTGGGAACCAGAATGGAGGCGATCAAGACCAACTGCATATCCATGGAACCAAAATTATGATTATGCAGTTCCCAAACTAGAAAGACTGCAAATATCAAAAGAATTAGCTGCATCATCTTGTACCATCGAAGAAAAGGATAAAATTTCACCTATTCGGAGACCTGACAGTGGTGGCACATTAGCTATTCTGACAAACAGGCTTCGTGTCAATCATTTCCCTGTTAAGTTCAATCCTGAGAGCATAATATTGCATTATAATGTTGCTGTAAAACCAAAGTTTTCTTCGAAACCTGGCCAACCTCAGAAATTATCCAAGTCTGATATGTCCATGATTAGAGAGAAATTGTTTTCTGATGATCCTGAGAGATTGCCCTTGGAGATGACTGCACATGACGGTGCAAGAAATATCTATAGTGCAGTGCAGTTACCAGAAGAGACCTTTACCGTAGAGATCTCTGAAGGAGAGGATGAAAAGACCATGTCATATATTGTTTCCATAACACTTGTTAATAAACTCAGGCTTCACAAGTTAATGGACTATCTTTGTGGGAATACCCTCTCCACTCCTAGGGATATTTTACAAGGGATGGACGTGGTGGTGAAAGAGAATCCAGCTAGACGCACAATTTCTGTGGGACGACACTTCTATCCCACAAATCCTCCTTTGGTAATGAAGGATCTTCACCATGGAACAATAGCTGTTGGGGGTTTTCAGCATAGTTTAAAGCCTACATCTCAAGGTCTATCCTTATGTGTAGACTACTCAGTGCTGGCTTTCCGAAAACAAATACCCGTCTTGGATTTCTTGCATGAGTGTATTGATGATTTTAAATTGGATGAATTTGAAAATTTTAGGAAATATGTTGAGGAGACGCTTATTGGATTGAAAGTTAGTGTGACTCATCGTAAATCCAAACAGAAATACATCATTGCAAGATTAACACCTATCATTGCAAGGTATGTCACTTTCCCCATTGACAATGCTAAGGGCTGGAACCTCCCAGAGGATGTTAGTCTTCTTAGCTTTTTCAAAGACAAATATGGCAAGGACATTGTATACAAAGATATTCCTTGCTTAGATTTAGGGAAAGGAAACAAGAAGAACTATGTACCAATGGAATTTTGTGTTTTAGTTGAAGGCCAAAGATATCCCAAGGAGCGTTTGGATAGTATTGCTGCAAAGACATTGAAAACAATGTCGCTGGCTCACCCAACTGAGAGGGAGTTTGCAATACAAAAGATGGTGCAGTCATGTGATGGACCTTGTGGTGGTGATATTATTCAAAATTTTGGAATGAGTATCAACACCACCATGACAACCATAGTAGGACGTGTAATTGGCCCGCCAGAATTGAAGTTAGGTGATCCAAATGGCAAGGTTATCAAGATAACAGTAGATCTGGAGAAATGTCACTGGAACCTTGCTGGAAGATCATTGGTGGAAGGCAAACCAGTTGAGCATTGGGGCATTGTTGATTTCACTAGTTTTGGGCCATATAAGTATAAATTAAGAGGGAAAGAATTCATTCAAAAGCTTATTGGTAAATACAAAAAATTGGGTATAAACATGCAGGAGCCCATACTGTATGAAGAATCTTCCATGAAGGTACTTGCAAGTTGTGATCTGCTATCTGAATTACTTGAAAAAATTAACAACATTTGTAAATATAACCAAGGCCACCTCCAATTTCTTCTCTGTGTAATGGCTAAAAAAAGTCCAGGTTATAAGTACCTCAAGTGGATTTCTGAGACCAGAGTTGGTATAGTGACACAGTGCTGCTTGTCTCATAGTGCTAATGAAGGGGAGGACAAATTTTATACTAATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTGGAGCTCAGTAATAGGCTCCCTTGCTTTGAGGGTGAAGGACGTGTTATGTTTGTAGGGGCTGATGTCAATCATCCTGGTTCTCGGGACACCAGGAGCCCATCGATTGCTGCTGTGGTTGCAACCGTTAATTGGCCTGCTGCAAACCGTTATGCAGCACGTGTTTTCCCTCAGTACAATCGATGTGAGAAAATATTGAACTTTGGGGAGGTTTGCCTTGAGCTTGTTGCATGTTATAGGAGGATGAATGGAGTCAAGCCAGAAAGAATTGTTGTTTTTCGTGATGGGGTTATCTGGAATCTCAAAAATGGGTACCAGGCTACCAGCTACTTCGGTCTTCAAAAGTTGGCGGTTGACTTGAAATTTGGGAATTATATATAA 2496 0.4195 MEAGGGNRGKGIQQPSEEVTLQPEWRRQSGSGGRGPDVILQPEWRRQRPSGSPSPNPPEPASEARKEEVLLQPEWRRSKPSSSVWEPEWRRSRPTAYPWNQNYDYAVPKLERLQISKELAASSCTIEEKDKISPIRRPDSGGTLAILTNRLRVNHFPVKFNPESIILHYNVAVKPKFSSKPGQPQKLSKSDMSMIREKLFSDDPERLPLEMTAHDGARNIYSAVQLPEETFTVEISEGEDEKTMSYIVSITLVNKLRLHKLMDYLCGNTLSTPRDILQGMDVVVKENPARRTISVGRHFYPTNPPLVMKDLHHGTIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKQIPVLDFLHECIDDFKLDEFENFRKYVEETLIGLKVSVTHRKSKQKYIIARLTPIIARYVTFPIDNAKGWNLPEDVSLLSFFKDKYGKDIVYKDIPCLDLGKGNKKNYVPMEFCVLVEGQRYPKERLDSIAAKTLKTMSLAHPTEREFAIQKMVQSCDGPCGGDIIQNFGMSINTTMTTIVGRVIGPPELKLGDPNGKVIKITVDLEKCHWNLAGRSLVEGKPVEHWGIVDFTSFGPYKYKLRGKEFIQKLIGKYKKLGINMQEPILYEESSMKVLASCDLLSELLEKINNICKYNQGHLQFLLCVMAKKSPGYKYLKWISETRVGIVTQCCLSHSANEGEDKFYTNLALKINAKLGGSNVELSNRLPCFEGEGRVMFVGADVNHPGSRDTRSPSIAAVVATVNWPAANRYAARVFPQYNRCEKILNFGEVCLELVACYRRMNGVKPERIVVFRDGVIWNLKNGYQATSYFGLQKLAVDLKFGNYI. 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04444 831 Gene3D paz domain 341 467 - -
Seca5g04444 831 MobiDBLite consensus disorder prediction 13 27 - -
Seca5g04444 831 CDD PAZ_argonaute_like 347 462 - -
Seca5g04444 831 SMART PAZ_2_a_3 351 484 IPR003100 GO:0005515
Seca5g04444 831 MobiDBLite consensus disorder prediction 1 91 - -
Seca5g04444 831 SUPERFAMILY PAZ domain 342 502 IPR036085 GO:0005515
Seca5g04444 831 SMART Piwi_a_2 647 822 IPR003165 GO:0003676
Seca5g04444 831 Gene3D - 717 805 IPR036397 GO:0003676
Seca5g04444 831 SMART DUF1785_2 293 346 IPR014811 -
Seca5g04444 831 FunFam Protein argonaute 7 341 467 - -
Seca5g04444 831 Pfam Piwi domain 648 802 IPR003165 GO:0003676
Seca5g04444 831 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 150 802 - -
Seca5g04444 831 ProSiteProfiles PAZ domain profile. 347 463 IPR003100 GO:0005515
Seca5g04444 831 Pfam N-terminal domain of argonaute 150 284 IPR032474 -
Seca5g04444 831 Gene3D - 529 710 - -
Seca5g04444 831 ProSiteProfiles Piwi domain profile. 647 802 IPR003165 GO:0003676
Seca5g04444 831 Pfam PAZ domain 351 479 IPR003100 GO:0005515
Seca5g04444 831 SUPERFAMILY Ribonuclease H-like 639 801 IPR012337 -
Seca5g04444 831 Pfam Argonaute linker 1 domain 294 345 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04444 Seca-Chr5 102011407 102016908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04444 151 802 Eukaryotic Initiation Factors Gene Family AT1G48410 32.612 1.65e-84 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04444 K11593 - gmx:100783571 1292.72