Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04442 ATGGCTCATTCAGCTGAACCCTCTTCATCTTTGAGCTTCACATCATCTTCCCATTTATCAAATGGCTCTGTTAGCCACAACATATCCTCTTCCCATGCCTCTGATCCTGGACTTAACCTTGAGGTTATCAGTTTGAGTAAGCTTAGCTCTAATTTAGAGCAGCTTTTGATTGATCCTGATTGTGATTACAGTGATGCCGACATCATTGTGGAGGGAAATCCTGTCAGTATCCATCGATGTATTCTGGGTTCTAGGAGTAAGTTTTTCCATGGATTATTCAAGAAGGAGAAAGGATCATCAGAGAATGGAGGAAAATTGAAGTATTGCATGAATGATTTGTTGCCTTATGGCAAGGTTGGGTATGAAGCCTTCCTCATATTCCTGAGCTATGTATATACTGGTAAACTCAAGCCCTCTCCAATGGAGGTGTCTACATGTGTTGACAATGTGTGTGCCCATGATGCTTGTGGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTCCAAATACCAGAGTTGGTATCACTTTTCCAGCGACGTCTTCTTAACTTTGTAGGAAAGGCTCTTGTGGAAGATGTCATCCCAATCCTTATGGTTGCTTACCATTGTCAATTGAGTCAACTTGTCATTCAATGTGTTGACAGGGTAGCAAGATCAGACCTTGACCAGATCTCAATTGAAAAAGAGCTTCCCCTTGAGCTCGCAGAAAAAGTTAAATTGCTTCGCCGCAACCCTCAGCAAGATGCTGAAAATGATGCTTCTGAAGAGGATGCTTTGTCTCTAAAACGAATCACTAGAATACACAAGGCATTGGATTCAGATGATGTTGAGCTTGTTAAACTTCTTCTAAATGAGTCAGACATTACTTTAGATAAAGCCAATGCTCTCCATTATGCTGCAGCCTACTGTGACCCCAAGGTTGTTTCTGAGGTACTTGGTTTGGCTCTGGCTAATGTCAATCTTCGGAATTCTAGGGGGTACACAGTGCTTCACATTGCTGCTATGCGTAAGGAGCCTTCCATTATAGTGTCTCTTCTTACAAAAGGAGCTTGTGCATCAGATTTGACTTTTGATGGTCAAAGCGCTGTTAGTATTTGTAGGAGGTTGACAAGGCCAAAGGATTATCATGCAAAAACAGAACAGGGGAAAGAAACAAACAAAGATAGGATATGCATTGATGTTCTTGAAAGAGAAATGCGGAGGAATCCAATGGCTGGGGATGCCTCTGTGACTTCCCATACAATGGCTGATGATCTCCACATGAAGCTACTATACCTTGAGAACAGAGTGGCATTTGCAAGACTATTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCACATGCTGAGACAACATCTGAGTTTGCTGGTCTTACAACATCAAAAGGTTCAAATGGAAACTTAAGGGAGGTTGATCTCAATGAGACTCCCATAATGCAAAACAAAAGACTTCTATCTAGGATGGAAGCCCTTATGAAAACAGTGGAAATGGGGCGGCGTTACTTTCCTCATTGCTCAGAAGTGCTAGACAAATTCATGGAGGATGACCTACCTGACTTGTTTTACCTTGAGAAGGGTACCCAAGAAGAGCAGAGAGTGAAGAGGATGCGTTTCATGGAACTTAAAGATGATGTAAACAAGGCTTTCAACAAGGACAAGGCTGAGTTTAGCCGTTCTGGGATTTCATCTTCATCATCCTCAACATCCCTTAGAGATTCTGTACATTACAAGGCTAGAAAAGTGTGA 1764 0.4212 MAHSAEPSSSLSFTSSSHLSNGSVSHNISSSHASDPGLNLEVISLSKLSSNLEQLLIDPDCDYSDADIIVEGNPVSIHRCILGSRSKFFHGLFKKEKGSSENGGKLKYCMNDLLPYGKVGYEAFLIFLSYVYTGKLKPSPMEVSTCVDNVCAHDACGPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVIPILMVAYHCQLSQLVIQCVDRVARSDLDQISIEKELPLELAEKVKLLRRNPQQDAENDASEEDALSLKRITRIHKALDSDDVELVKLLLNESDITLDKANALHYAAAYCDPKVVSEVLGLALANVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPMAGDASVTSHTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLTTSKGSNGNLREVDLNETPIMQNKRLLSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRVKRMRFMELKDDVNKAFNKDKAEFSRSGISSSSSSTSLRDSVHYKARKV. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04442 587 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Seca5g04442 587 SUPERFAMILY POZ domain 48 188 IPR011333 -
Seca5g04442 587 MobiDBLite consensus disorder prediction 562 587 - -
Seca5g04442 587 Pfam BTB/POZ domain 62 179 IPR000210 GO:0005515
Seca5g04442 587 FunFam Regulatory protein NPR3 38 222 - -
Seca5g04442 587 SMART ANK_2a 330 362 IPR002110 GO:0005515
Seca5g04442 587 SMART ANK_2a 267 295 IPR002110 GO:0005515
Seca5g04442 587 SMART ANK_2a 296 326 IPR002110 GO:0005515
Seca5g04442 587 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
Seca5g04442 587 Gene3D Potassium Channel Kv1.1; Chain A 38 222 IPR011333 -
Seca5g04442 587 PANTHER REGULATORY PROTEIN NPR3 10 579 IPR044292 GO:0009862|GO:2000022|GO:2000031
Seca5g04442 587 Pfam NPR1/NIM1 like defence protein C terminal 372 574 IPR021094 -
Seca5g04442 587 SMART BTB_4 64 190 IPR000210 GO:0005515
Seca5g04442 587 MobiDBLite consensus disorder prediction 562 578 - -
Seca5g04442 587 CDD BTB_POZ_NPR_plant 47 190 - -
Seca5g04442 587 Pfam Ankyrin repeats (3 copies) 273 355 IPR002110 GO:0005515
Seca5g04442 587 Gene3D - 264 404 IPR036770 -
Seca5g04442 587 FunFam regulatory protein NPR3-like 264 404 - -
Seca5g04442 587 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Seca5g04442 587 SUPERFAMILY Ankyrin repeat 256 373 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04442 Seca-Chr5 101988660 101993937 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca5g04442 NPR1_like_C 3.4e-98 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04442 K14508 - gmx:100217338 999.579