Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04433 ATGGTTCTTCAAAATGACATCGATCTGCTTAACCCACCGGTGGAGCTTGAGAAGAGGAAGCACAAGCTGAAACGTCTCGTCCAATCTCCAAACTCGTTCTTCATGGACGTCAAATGTCAAGGTTGCTTCAATATAACCACCGTATTCAGTCACTCCCAAACGGTTGTTGTTTGTGGGAATTGCCAGACAGTGTTGTGCCAGCCAACTGGTGGCAGAGCCAGGCTAACAGAGGGGTGCTCCTTCAGGAAGAAGGGAGATTAG 261 0.4866 MVLQNDIDLLNPPVELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD. 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04433 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Seca5g04433 86 Gene3D - 5 85 IPR023407 -
Seca5g04433 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Seca5g04433 86 FunFam 40S ribosomal protein S27 1 86 - -
Seca5g04433 86 PANTHER 40S RIBOSOMAL PROTEIN S27 1 86 IPR000592 GO:0003735|GO:0005840|GO:0006412
Seca5g04433 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Seca5g04433 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04433 Seca-Chr5 101922120 101923280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04433 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 5.08e-59 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04433 K02978 - gmx:100499804 177.178