Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04429 ATGAAAGAAGGGGGTGGAAGGAAGCAGGGTGCAACCTCACCCTGTGCTGCATGCAAGCTTCTGAGGAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCCTATTTCCCTGCTGATGAGCCCCAGAAGTTTGCAAATGTGCACAAGGTTTTTGGTGCTAGCAATGTTAACAAAATGCTTCAGGTACACTTTCTTCTCAAATCTCTCGACCTACCAATGCATCAACGAGGGGATGCAGTGAGTAGCATGGTGTATGAGGCCAATGCCAGAGTCCGAGACCCTGTGTATGGGTGTGTTGGGGCCATTTCTTCTCTTCAGCAACAGATTGATGTGTTACAGACCCAATTGGCCCTGGCCCAAGCTGAGGTGGTACACCTTCGGGTGCGCCAAAATAGAGGTTTTTCCAATCATGGGCTTAGATCCAATAGCCCAACAAGTAGTGGGTCCCCATCATCTAAGATCATGAACTCACAAGCTAAGCCTATTTTTGACATGGAAATTGGGGTGGACCAGGCCAGTTATGGTGGTTCAATGTGGTAA 537 0.4823 MKEGGGRKQGATSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQVHFLLKSLDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVRQNRGFSNHGLRSNSPTSSGSPSSKIMNSQAKPIFDMEIGVDQASYGGSMW. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04429 178 Pfam Lateral organ boundaries (LOB) domain 14 119 IPR004883 -
Seca5g04429 178 Coils Coil 101 121 - -
Seca5g04429 178 ProSiteProfiles LOB domain profile. 13 122 IPR004883 -
Seca5g04429 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 145 - -
Seca5g04429 178 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04429 Seca-Chr5 101883388 101886395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04429 1 178 AS2 family AT1G31320 76.536 3.09e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca5g04429 LOB 5.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04429 - - gmx:100794219 301.597