Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04421 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCCGCTCCCTCCGCCGCCACCGCCGCCGTTGTAGCTGCACCTTCCGGTCCCCTCGTCCCTCACGATTCCTCATCGGCTGCTTCTGCCGTGGCCAACGGTGGCGCTGCCGCAGCCTCCGTTCCCTTGGCTGTGGACCCCGCGGCCGGCAATGTTCCCGGGCGGCGGAGCTTCCGGCAAACGGTGTGCCGGCACTGGCTTCGCAGCCTGTGCATGAAAGGCGACGCGTGCGGGTTCTTGCACCAGTACGACAAGGCCCGGATGCCGGTGTGTCGGTTTTTCAGACTGTACGGGGAGTGCCGCGAGCAGGATTGCGTGTATAAGCACACCAATGAAGATATCAAGGAGTGTAACATGTATAAGTTAGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTGCTGGACCTCCCCCACCCGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCTTACAATTATAACAATAACAAATTTTTTCAACAAAGGGGTGCTAGCTATACTCAACAAGTGGAAAAATCTCAGCTTCCTCAAGGAATTAATTCTACAAACCAAGGTGTGGCTGGAAAACCATTAGCAGCAGAGTCAGGAAATGTCCAGCAGCAGCAACAAGTTCAACAGTCTCAGCAGCAGGCAAGTCAGAGCCAAGTGCAAAATCTTGCTAATGGCCAACCCAATCAAGCCAATAGAACTGCAACCCCTTTGCCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGATTTTCTCAGTGAACCGTACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGGAACTGGAAATATGCTCACGGAACAGCACATTATGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGTGAGCAGTTAGCATCCTTGCTTTATCTTGAGCCGGATAGTGAACTCATGGCTATCTCAGTTGCAGCAGAGTCTAAGCGAGAAGAGGAAAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAGGAGGAGGAGAGCTTTGGTCATGGTGTAGGACCAGTTGGTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCGCCTCACATGCCTCTTGGGCGTGGAGCCAGACCCATCCCTGGAATGCAAGGTTTTAACCCTGTAATGATGGGTGATGGATTATCCTATGGACCTGTTGGACCTGATGGTTTTGGTATGCCAGATCTTTTTGGTGTGGGACCCCGAGCTTTTGCCCCATATGGTCCTAGGTTCTCTGGTGATTTTGCAGGCCCCCCAGCAGCAATGATGTTTCGTGGGCGGCCCTCACAACCTGGGATGTTTCCAGGTGGTGGATTTGGGATGATGATGAATCCTGGACGTGCTCCCTTTATGGGGGGGATGGGTGTTGCAGGTGCAAATCCACCAAGAGCTGGTAGGCCAGTTAATATGCCTCCAATGTTTCCACCTCCTCCCCCACTTCAGAATGCAAATCGTGTTCCCAAGAGAGATCAAAGGACTAATGATCGGAATGATAGGTATGGTTCAGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGGACCTGATGATGACATGCAGTATCAGCAAGGATACAAGGCAAACCAGGATGATCAATATCCCGGTGTGAACAACTTCAGGAATGACGATAGTGAAAGTGAGGATGAGGCACCTAGGAGGTCCAGACATGGAGAGGGAAAAAAGAAACGTGAAGCTTAG 2076 0.4913 MEDSEGVLSFDFEGGLDAAPSAATAAVVAAPSGPLVPHDSSSAASAVANGGAAAASVPLAVDPAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSAGPPPPVEEVLQKIQHLYSYNYNNNKFFQQRGASYTQQVEKSQLPQGINSTNQGVAGKPLAAESGNVQQQQQVQQSQQQASQSQVQNLANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPVGQGRGRGRGMMWPPHMPLGRGARPIPGMQGFNPVMMGDGLSYGPVGPDGFGMPDLFGVGPRAFAPYGPRFSGDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRAPFMGGMGVAGANPPRAGRPVNMPPMFPPPPPLQNANRVPKRDQRTNDRNDRYGSGSEQGKSQDMLSQSGGPDDDMQYQQGYKANQDDQYPGVNNFRNDDSESEDEAPRRSRHGEGKKKREA. 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04421 691 Gene3D - 69 130 - -
Seca5g04421 691 MobiDBLite consensus disorder prediction 587 605 - -
Seca5g04421 691 SUPERFAMILY CCCH zinc finger 73 104 IPR036855 GO:0046872
Seca5g04421 691 Gene3D ph1033 like domains 239 400 - -
Seca5g04421 691 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 35 684 IPR045168 -
Seca5g04421 691 MobiDBLite consensus disorder prediction 412 471 - -
Seca5g04421 691 CDD YTH 263 397 IPR007275 GO:0003723
Seca5g04421 691 ProSiteProfiles YTH domain profile. 262 397 IPR007275 GO:0003723
Seca5g04421 691 MobiDBLite consensus disorder prediction 579 691 - -
Seca5g04421 691 SMART c3hfinal6 129 153 IPR000571 GO:0046872
Seca5g04421 691 SMART c3hfinal6 101 127 IPR000571 GO:0046872
Seca5g04421 691 SMART c3hfinal6 73 99 IPR000571 GO:0046872
Seca5g04421 691 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 68 129 - -
Seca5g04421 691 MobiDBLite consensus disorder prediction 667 691 - -
Seca5g04421 691 MobiDBLite consensus disorder prediction 193 256 - -
Seca5g04421 691 Pfam YT521-B-like domain 262 324 IPR007275 GO:0003723
Seca5g04421 691 Pfam YT521-B-like domain 341 396 IPR007275 GO:0003723
Seca5g04421 691 MobiDBLite consensus disorder prediction 436 454 - -
Seca5g04421 691 MobiDBLite consensus disorder prediction 610 624 - -
Seca5g04421 691 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Seca5g04421 691 MobiDBLite consensus disorder prediction 625 666 - -
Seca5g04421 691 ProSiteProfiles Zinc finger C3H1-type profile. 73 100 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04421 Seca-Chr5 101780220 101792090 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca5g04421 YTH 3.7e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04421 K14404 - gmx:100802826 1163.67