Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04415 ATGAGTTCTCTTATTAGCCATATCACAGCGAAAGCAGGTTTGTGCTGTTTGGTGTTTGTGCTAATTGGAGCACTTCCTTTCTCCTCAGATGCACAACTTGATCCCTCGTTCTACAGGGATTCTTGTCCAAATGTGCATTCAATTGTGCGTGAAGTTATCAGAAATGTTTCAAAATCAGATCCCCGCATGCTTGGCAGTCTCATGAGGCTCCACTTTCATGACTGTTTTGTTCAAGGCTGTGATGCATCAATCTTGCTGAACACCACTGCTACCATTGTGAGTGAGCAAACAGCTTTTGGAAATAACAACTCCATAAGAGGTTTGGATGTTGTGAATCAGATCAAAACAGCCGTGGAAAATGCTTGTCCTAATACAGTCTCTTGTGCGGATATTCTTGCTCTTGCTGCTGAGATATCCTCTGTTCTGGCTAATGGTCCTGATTGGAAAGTTCCATTGGGAAGACGAGATAGTTTAACAGCAAACCTAACCTTAGCAAATCAAGCTCTTCCAGGTCCCGATTTCAATCTCACTCGACTTAAATCTGTATTTCGTGATCAAGGCCTCAACACTACTGATCTAGTTGCACTTTCAGGTTCTCATACATTTGGTAGAGGTCAATGTAGATTTTTCAATAATAGATTATACAATTTCAGCGGCACTGGTAAACCCGATCCAAGTCTCAACACAACCTACTTACAAACACTACAAGCAATATGCCCCAATGGTGGAGCTGGTACCACCCTCACCAATTTGGACCCAGTCACTCCTGATATCTTTGATTCCAAATACTTCTCCAATCTCCAGGCTTTTCCAGGTCATAGAGGGCCTGTTTCATGTCTGACTTTTAGGCAAGGAACTTCAGAGCTTTTTTCTGGTTCATTTGATCGAACAGTTAAGATATGGAATGTTGAAGACAGAACTTACATGAGCACTCTATTTGGTCACCAAAGTGAAGTATTAAGTATTGATTGCTTACGCAAAGAAAGGGTGCTAACCGCTGGACGTGATCGTAGCATGCAGTTGTTTAAGGTTCATGAAGAGTCACGTCTTGTATTTCGCGCTCCTGCATCTTCCTTAGAATGCTGTTGTTTTGTTAATAATGATGAATTTTTGTCTGGTTCGGATGATGGAAGCGTTGAGCTTTGGACTGTAATGCGAAAGAAGCCTATTTACATTTTGAAGAATGCTCATGCTCTACTGACTGATACTAGCTTGAAACCTGACCAAAAGGGTAGTGAAAGACTCCCCAATGGCAACCTAGAAAATGGTCATCATCATCCCGAGAATCATCCCTGTTCATCAGTATTCTCTTGGGTCAGTGCAGTCACTGTTTGTAGAAATAGTGACCTTGCTGCATCTGGGGCTGGTAATGGTTCTGTTCGGTTGTGGGCAATTGAAAGTGAGACCAAAGACATCAAATCTATTTATAATGTGCCACTGGTTGGGTTTGTGAATTCGTTGGCTTTTGCAAAATCAGGAGAATTCCTAGTTGCTGGAGTTGGGCAGGAACCTCGTCTAGGAAGGTGGGGACGAACCCCTGAAGCTCGGAATGGAGTTTCAATTCTTCCTCTCAAGTTGTTATAG 1584 0.4255 MSSLISHITAKAGLCCLVFVLIGALPFSSDAQLDPSFYRDSCPNVHSIVREVIRNVSKSDPRMLGSLMRLHFHDCFVQGCDASILLNTTATIVSEQTAFGNNNSIRGLDVVNQIKTAVENACPNTVSCADILALAAEISSVLANGPDWKVPLGRRDSLTANLTLANQALPGPDFNLTRLKSVFRDQGLNTTDLVALSGSHTFGRGQCRFFNNRLYNFSGTGKPDPSLNTTYLQTLQAICPNGGAGTTLTNLDPVTPDIFDSKYFSNLQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNVEDRTYMSTLFGHQSEVLSIDCLRKERVLTAGRDRSMQLFKVHEESRLVFRAPASSLECCCFVNNDEFLSGSDDGSVELWTVMRKKPIYILKNAHALLTDTSLKPDQKGSERLPNGNLENGHHHPENHPCSSVFSWVSAVTVCRNSDLAASGAGNGSVRLWAIESETKDIKSIYNVPLVGFVNSLAFAKSGEFLVAGVGQEPRLGRWGRTPEARNGVSILPLKLL. 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04415 527 Pfam Peroxidase 49 273 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Seca5g04415 527 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
Seca5g04415 527 PRINTS G protein beta WD-40 repeat signature 451 465 IPR020472 -
Seca5g04415 527 FunFam Peroxidase 36 184 - -
Seca5g04415 527 SUPERFAMILY Heme-dependent peroxidases 32 302 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 Gene3D - 33 210 - -
Seca5g04415 527 ProSiteProfiles Plant heme peroxidase family profile. 32 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 311 IPR001680 GO:0005515
Seca5g04415 527 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 FunFam Peroxidase 170 277 - -
Seca5g04415 527 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
Seca5g04415 527 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 PRINTS Plant peroxidase signature 250 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g04415 527 Pfam WD domain, G-beta repeat 425 463 IPR001680 GO:0005515
Seca5g04415 527 Pfam WD domain, G-beta repeat 265 302 IPR001680 GO:0005515
Seca5g04415 527 Pfam WD domain, G-beta repeat 352 382 IPR001680 GO:0005515
Seca5g04415 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 304 - -
Seca5g04415 527 ProSitePatterns Trp-Asp (WD) repeats signature. 289 303 IPR019775 -
Seca5g04415 527 SMART WD40_4 305 343 IPR001680 GO:0005515
Seca5g04415 527 SMART WD40_4 345 383 IPR001680 GO:0005515
Seca5g04415 527 SMART WD40_4 429 464 IPR001680 GO:0005515
Seca5g04415 527 SMART WD40_4 263 302 IPR001680 GO:0005515
Seca5g04415 527 Gene3D - 255 527 IPR015943 GO:0005515
Seca5g04415 527 CDD secretory_peroxidase 32 275 IPR033905 GO:0004601|GO:0042744
Seca5g04415 527 MobiDBLite consensus disorder prediction 405 427 - -
Seca5g04415 527 PANTHER U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 265 525 - -
Seca5g04415 527 SUPERFAMILY WD40 repeat-like 259 501 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04415 Seca-Chr5 101687355 101697661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04415 18 302 Peroxidase AT5G06730 54.737 2.83e-101 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04415 K14793 - gmx:100789947 483.026