Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04409 ATGGCACTTTCTATGCACAAGGACTCGTCCAACAATCAGATGGATTCTAGCAAGTATGTGAGGTATACACCTGAACAAGTAGAGGCTTTGGAGAGGGTCTATGCAGAATGTCCAAAACCCAGTTCTTTGAGAAGGCAGCAGCTTATCAGGGAGTGCCCCATCCTCTCTAACATTGAACCCAAACAAATCAAAGTTTGGTTTCAAAATCGCAGATGTCGAGAGAAGCAGAGAAAGGAAGCTTCTCGTCTGCAGACAGTGAATAGAAAGCTGACTGCAATGAACAAACTGTTAATGGAAGAGAATGACCGTTTGCAGAAGCAGGTCTCACATCTGGTTTATGAAAATGGATACATGAAGAACCAGATACAGACTGCTTCTGCTGCTACCACCACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAAAACCAACAGCAAAACCCAACTCAGCATCCCCAGAGGGATGCCAACAACCCAGCTGGTCTTCTCGCCATTGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAGCCCACAAAGGTTGCCGAGATTCTTAAAGATAGAACATCGTGGTATCGTGACTGTCGATGCCTTGATGTCTTGAGTATAGTCCCCACTGGAAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCGCCTACAACATTGGCAGCAGCAAGGGACTTTTGGACACTAAGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCTTTGACTTCTTCAACTGGTGGTCCCACAGGGCCTCCTCCTTCAAACTTTGTTAGAGCTGAAATGCTTCCTAGTGGTTATCTAATTAGACCTTGTGAGGGTGGTGGATCCATTATTCATATTGTTGATCATATTGATTTAGATGTCTGGAGTGTCCCTGAAGTATTGAGGCCCCTCTATGAATCATCAAAAATCTTGGCTCAGAAATTGACTATTGCTGCCTTGCAACATATAAGACAAATAGCACAAGAATCAAGTGGAGAAATTCAGTATGGTGGGGGACGCCAACCTGCTGTCTTGAGGACATTTAGTCAGAGGCTTTGCAGGGGATTTAATGATGCCGTGAATGGGTTTGTGGATGATGGTTGGTCACTGATGGGTAATGATGGAGTGGAAGATGTGACAATAGCCATAAACTCATCTCCTAACAAGTTTTTGGGGTCCAATTACAATTCGTCAATGTTCCCAGCATTTGGAGGTGGGGTCCTGTGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTCTGAGGGAGCATCGGTCAGAGTGGGCGGATTATGGGGTTGATGCCTACTCTGCTGCATCTCTTAAGGCTAGTCCCTATGCAGTTCCTTGTGCAAGGCCTGGTGGTTTCCCCAGCAGCCAGGTCATTTTACCCCTTGCCCATACTATTGAGCATGAGGAGTTCCTGGAGGTAGTTCGTATAGAGGGCCATGCTTTTTCCCCTGAAGACGTGGCATTGGCACGTGATATGTATCTATTGCAGCTGTGCAGTGGAGTTGATGAAAATGCAATTGGGGCATGTGCTCAACTTGTGTTTGCACCTATTGATGAATCATTTGCGGATGATGCTCTTCTACTACCTTCTGGTTTTCGTGTCATTCCTTTGGATCCTAAATCAGATGGTCCAGCAGCAACAAGGACATTGGATTTGGCATCCACCCTTGAAGTGGGATCTGGGAATGCTCGATCAGCTGGTGAAACTGATGCAAATGGTTACAACCTTAGGTCGGTCCTCACTATTGCATTCCAATTTACCTTTGAGAACCATATGCGAGACAATGTGGCTGCTATGGCTCGTCAGTATGTGCGTAGTGTTGTGGGATCTGTTCAGAGGGTTGCCATGGCTATTGCTCCTTCTCGCCTCAGCACCCAGATGGCGCCAAAGTCACTTCCTGGTTCACCAGAGGCTCTTACTTTAGCAAGATGGATCTGTAGAAGCTACAGGATGCACACTGGTGCAGAGCTTTTTAGAGTTGAGTCCACAGCTGGAGATGCAATCTTGAAGCAACTTTGGCACCATTCAGATGCAATCATGTGCTGTACTGTAAAAACAAATGCATCTCCAGTGTTCACCTTTGCAAACCAGGCTGGACTAGACATGCTTGAAACTACTCTGGTTGCCCTTCAAGATATAATGCTTGACAAAGTTCTTGATGAATCTGGCAGGAAGATTCTTTGCACTGAGTTCTCCAAGATAATGCAACAGTTTCCTGTTTGTTTTCAGGGATTTGCATATCTGCCTGCAGGGATATGTGTATCCAGTATGAATAGGCCAGTGTCCTATGAGCAGGCCATTGCATGGAAGGTTCTCAACGATGATGATTCTAATCACTGCCTAGCTTTCATGTTCATGAACTGGTCTTTTGTTTGA 2556 0.4628 MALSMHKDSSNNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKNQIQTASAATTTDNSCESVVMSGQNQQQNPTQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRTSWYRDCRCLDVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPPSNFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGNDGVEDVTIAINSSPNKFLGSNYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPAATRTLDLASTLEVGSGNARSAGETDANGYNLRSVLTIAFQFTFENHMRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQMAPKSLPGSPEALTLARWICRSYRMHTGAELFRVESTAGDAILKQLWHHSDAIMCCTVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKILCTEFSKIMQQFPVCFQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMNWSFV. 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04409 851 MobiDBLite consensus disorder prediction 1 20 - -
Seca5g04409 851 SUPERFAMILY Bet v1-like 413 600 - -
Seca5g04409 851 ProSiteProfiles START domain profile. 156 357 IPR002913 GO:0008289
Seca5g04409 851 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Seca5g04409 851 SUPERFAMILY Bet v1-like 166 377 - -
Seca5g04409 851 CDD homeodomain 18 78 IPR001356 GO:0003677
Seca5g04409 851 Gene3D - 199 382 IPR023393 -
Seca5g04409 851 MobiDBLite consensus disorder prediction 137 158 - -
Seca5g04409 851 Coils Coil 87 107 - -
Seca5g04409 851 CDD bZIP 70 109 - -
Seca5g04409 851 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Seca5g04409 851 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 851 IPR044830 GO:0003700
Seca5g04409 851 SMART START_1 165 375 IPR002913 GO:0008289
Seca5g04409 851 SMART HOX_1 15 81 IPR001356 GO:0003677
Seca5g04409 851 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Seca5g04409 851 CDD START_ArGLABRA2_like 160 376 - -
Seca5g04409 851 Pfam START domain 166 373 IPR002913 GO:0008289
Seca5g04409 851 FunFam homeobox-leucine zipper protein ATHB-15 201 382 - -
Seca5g04409 851 MobiDBLite consensus disorder prediction 137 157 - -
Seca5g04409 851 Pfam MEKHLA domain 700 850 IPR013978 -
Seca5g04409 851 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Seca5g04409 851 Gene3D - 9 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04409 Seca-Chr5 101603549 101609284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04409 5 851 Homeobox Transcription Factor Family AT2G34710 79.460 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca5g04409 START 2.8e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04409 K09338 - gmx:100807428 1592.02