Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04407 ATGACATCTCCTGCTCATGATCCCACAGATAATGAAGCCGATGGACAGCAACGGTCAGAATCACAGATGCAAACTCTATCAGAAAATGGTATTTCTCATGCAGGTATTGGCACTCAAAATGTTCGGTATGAAACAGCTCCGCAACTTGGAATTGGGCATGCTATGGCACCATTTGTTTACCCATGTCCAAATCTGTACTACGGAAGCATCTTTGCTCCCTATTATGCACAACCTTATCCCCCACAACCCTATGGTGGACATCCAATGGTCTATCTTCAGTTAATGGGAGTTCAACAAACAGGTGTTCCTTTGCCAACCGGTGCAATTGGGAAGACCGTGTTTGTTAATGCAAAACAATATCATGGTATATTAAGACGTAGGCAATCACGTGCTAAAGCTGAATCAAAAAACAAAGCTTCAAGGAATCGAAAGCCATACTTGCATGAATCTCGACATTTGGATGCATTGAGAAGAGCAAGAGGATGTGGAGGCCGATTTCTGAGTTCAAAGAAAAATGAGAATGAACAGGATGAGGTTGCATCAACTGACAAATCACAGTCCAATATAAATCTCAATTCTGATAAAAATGATATTGCGCCATCAAATAAAACATCATAA 618 0.4094 MTSPAHDPTDNEADGQQRSESQMQTLSENGISHAGIGTQNVRYETAPQLGIGHAMAPFVYPCPNLYYGSIFAPYYAQPYPPQPYGGHPMVYLQLMGVQQTGVPLPTGAIGKTVFVNAKQYHGILRRRQSRAKAESKNKASRNRKPYLHESRHLDALRRARGCGGRFLSSKKNENEQDEVASTDKSQSNINLNSDKNDIAPSNKTS. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04407 205 ProSiteProfiles NF-YA/HAP2 family profile. 109 169 IPR001289 GO:0003700|GO:0006355
Seca5g04407 205 Gene3D - 110 170 - -
Seca5g04407 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 201 IPR001289 GO:0003700|GO:0006355
Seca5g04407 205 MobiDBLite consensus disorder prediction 181 205 - -
Seca5g04407 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 166 IPR001289 GO:0003700|GO:0006355
Seca5g04407 205 PRINTS CCAAT-binding transcription factor subunit B signature 143 166 IPR001289 GO:0003700|GO:0006355
Seca5g04407 205 PRINTS CCAAT-binding transcription factor subunit B signature 112 134 IPR001289 GO:0003700|GO:0006355
Seca5g04407 205 SMART cbf3 108 169 IPR001289 GO:0003700|GO:0006355
Seca5g04407 205 ProSitePatterns NF-YA/HAP2 subunit signature. 114 134 IPR018362 GO:0003677|GO:0016602
Seca5g04407 205 MobiDBLite consensus disorder prediction 127 159 - -
Seca5g04407 205 MobiDBLite consensus disorder prediction 1 24 - -
Seca5g04407 205 MobiDBLite consensus disorder prediction 125 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04407 Seca-Chr5 101579669 101581722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04407 1 205 CCAAT-HAP2 Transcription Factor Family AT1G30500 49.758 2.07e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca5g04407 CBFB_NFYA 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04407 K08064 - gmx:100809036 314.694