Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04402 ATGTCAATGAATAATTACCGAATGGATCTTGGGAGGCCTGCCTCAGGTAGAAGAAGATTGAAAGATTTATTGCTTCAGAGCGATAATCGTTTTTGTGCTGATTGTAACGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATCTCGAAGGTTTTGTCTGTGACGTTGGATGAATGGTCAGATGATGAAGTAGATGCAATGATTGAAGTTGGGGGGAATGCTTCTGCTAATTCAATTTATGAGGCTTATATTCCTGAAGGATATATAAAACCCGGACCAGATGCCAGCCATGAGCAGCGTGCAAAGTTTATACGGTCAAAGTATGAGTTACAAGAATTTTTGAAACCTAGTTTGCGCATTGTATCTGGAAAAAGCAATCTATCAAGTTCTTCCAAAAGTTTCATGGACAGTTTTAAAAGTACAAGTTCACAGAGAATGGAAGGTATGGTAGAATTTATTGGAATTGTGAAGGTGAAAGTGATTCAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTATTTTGAACCTCGGCCAACAGACTGTCCAGACAACTGTAGTGAGGAGTAACTTGAATCCCGTCTGGAATGAGGAACATATGCTGTCTGTTCCCGAGCATTATGGACAGCTGAAATTGGTATGA 711 0.3966 MSMNNYRMDLGRPASGRRRLKDLLLQSDNRFCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEVDAMIEVGGNASANSIYEAYIPEGYIKPGPDASHEQRAKFIRSKYELQEFLKPSLRIVSGKSNLSSSSKSFMDSFKSTSSQRMEGMVEFIGIVKVKVIQGTNLAIRDIKSSDPYVILNLGQQTVQTTVVRSNLNPVWNEEHMLSVPEHYGQLKLV. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04402 236 CDD ArfGap 20 126 - -
Seca5g04402 236 Gene3D C2 domain 153 236 IPR035892 -
Seca5g04402 236 SUPERFAMILY ArfGap/RecO-like zinc finger 17 134 IPR037278 -
Seca5g04402 236 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 168 229 IPR035892 -
Seca5g04402 236 FunFam Arf-GAP with dual PH domain-containing protein 1 12 140 - -
Seca5g04402 236 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Seca5g04402 236 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Seca5g04402 236 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Seca5g04402 236 ProSiteProfiles C2 domain profile. 154 236 IPR000008 -
Seca5g04402 236 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 235 IPR044518 GO:0005096|GO:0005543
Seca5g04402 236 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Seca5g04402 236 Gene3D Arf GTPase activating protein 6 138 IPR038508 -
Seca5g04402 236 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Seca5g04402 236 Pfam C2 domain 172 234 IPR000008 -
Seca5g04402 236 SMART arf_gap_3 17 139 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04402 Seca-Chr5 101538735 101543516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04402 3 235 C2H2 Transcription Factor Family AT4G05330 71.193 5.46e-127 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04402 K12486 - gmx:100810806 399.053