LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g04400	ATGGTGTCGGTGACAGTGAGCACTGTAGAGGCTCAACAAAAGTCATTTCTTATAAATTGTGGTTCAAATTCTTCTGTAAATGTGGATGGTAGGAGATGGATTGGGGACATGGCCCCTGATAGCAATGTCACCCTCAGCTCCCCTGGTGTTGTTGCTTCCACTTCTGCATTAAGTGCCAGTTCAAACTATGATCCCCTCTACAAAACAGCCAGGATTTTCACAGCTTCTCTAAATTACACAATCAAAGGAGTTCAAGGAAACTATTTTGTTAGGTTCCATTTCTGCCCCTTTGAGACTAATGACTATAATGTAAATGAGTCCTCATTTGGTGTTGTGGTCAATGGTTTGAAACTATTGTCTGAGTTTGATGTTCCAGGAAAGAATTCCAGTTCATTCTTCTTGATTAAAGAGTATATTCTGGCTGTTGATGCTGATATGCTTGTGATTGAGTTTGTTCCAACTGGAAGCTCATTTGGCTTCATCAATGCCATTGAGATTGTCCCAGTTGTAGGTGAGCTTTTTAGTGGCTCAGTCAGTAAAGTTGGTGGAAGTGGTGGAAGCATAAATTTGAATGGACGTGAGATGGAGACTATGTATAGGTTAAATGTTGGTGGGCCTGAGATTGAATCCAATGAGGATCCAAATCTTTGGAGAACCTGGGAAGTGGATTCTAGCTATATGATCACAGAAAATGCTGGTTCAGCAATTAAGAACAGCTCTAATATTACATATGCTTCCATGAATGATACTTCAGTGGCTCCTCTCCTTGTGTATGAAACTGCAAGGGCAATGTCTAACACTCAAGTCTTGGACAAAAGATTTAACATGTCATGGAAATTTGAAGTAGATCCCGATTTTGATTATTTGGTCCGATTGCATTTCTGTGAGCTGATGTATGATAAGTCAAATGAGAGAATATTCAGGATCTACATAAACAACAGGACAGCTGCAGATAATTTTGATATTTTTGTACGAGCTGGAGGGATGAATAAAGCATATCACCAGGATCATTTTGATTCTGCATCATCAAGGATTGACACACTTTGGGTTCAACTGGGTCCTGATACAGCTGCTGGTGCTGCAGGAACTGATGCTCTCTTGAATGGTCTAGAGATTTTCAAGCTTAGTCGAAATGGTAATCTTGCCTATGTAGAGAGATATAACTCAGCTGACAATTCAGTAAGCAAATCAAAAGCAAGAATTTGGGTTGGAATTGGAGCAGGTCTAGCTTCTGTAGCTGTAATTGCATGTATAGTTGTTCTTGTTTTCTGTTTCTGCAGAAGGAGGAAGAAAGAATCAAATGATACCAAAAACAACTCTCCGGGTTGGCGACCATTGTTCCTGTATGGAGGGGCTGCTGTAAACAGTACTGTTGGTGCCAAGGGATCAGCAGGTACTCAGAAGTTATATGGATCTGTGGCCTCAACCAGAGTTGGCAAGCGGTTTACATTGGCAGAAATTACTGCTGCAACAAATAACTTTGATGACAGTTTGGTGATTGGAGTTGGAGGCTTTGGTAAGGTGTATAAGGGGGAGATTGAGGATGGTGTCCCTGCTGCAATTAAGCGTGCCAACCCGCAATCTGAGCAAGGTCTGGCTGAATTTGAGACAGAAATTGAGATGCTCTCCAAACTCAGACATAGGCATCTGGTGTCCTTGATTGGTTTCTGTGAAGAGAAAAATGAAATGATTCTGGTTTATGAGTACATGGCAAATGGAACTCTTAGAAGTCATCTATTTGGGAGTGATCTCCCTCCATTAACTTGGAAGCAGCGCCTAGAAGCATGCATTGGTGCTGCAAGAGGACTTCACTACCTTCACACAGGAGCTGAACGTGGAATAATTCACAGGGATGTCAAAACAACCAATATACTGTTAGATGAGAATTTTGTAGCCAAAATGTCTGATTTTGGGTTGTCAAAAGATGGTCCTGCATTTGAGCATACTCATGTTAGTACTGCTGTGAAAGGAAGTTTTGGCTATCTAGATCCGGAGTACTTCAGAAGACAACAATTGACTGAGAAATCAGATGTTTACTCTTTTGGAGTTGTGTTGTTTGAAGCTGTTTGTGCTCGAGCTGTGATTAATCCCACCTTGCCTAAAGATCAGATCAACCTTGCAGAATGGGCAATGAGATGGCAAAGGCAAAGATCACTTGACAAAATTATTGATCCACATCTTAAAGGAAATTATTGTCCAGAATCTTTGTCTAAGTTTGGGGAGATAGCAGAGAAATGTCTAGCTGATGATGGGAAGAGCCGCCCCACCATGGGGGAGGTGTTATGGCACTTGGAGTATGTCTTGCAGCTACATGAAGCTTGGCTCAACATGAACAACACTGAAACTTCCTTCTCTAGTAGTCAAGCTATTAGTGGTCCTAAAGATGGAGGACTAGAAGTGATGCAGGAGCCTTCAAGTCAAGATGAAGAGGTTGGTTTAGATCTCAAACAGACAACTGATGGAGGAGGAGACAAAGAAGTGAATGCTGCAATTTGA	2496	0.4159	MVSVTVSTVEAQQKSFLINCGSNSSVNVDGRRWIGDMAPDSNVTLSSPGVVASTSALSASSNYDPLYKTARIFTASLNYTIKGVQGNYFVRFHFCPFETNDYNVNESSFGVVVNGLKLLSEFDVPGKNSSSFFLIKEYILAVDADMLVIEFVPTGSSFGFINAIEIVPVVGELFSGSVSKVGGSGGSINLNGREMETMYRLNVGGPEIESNEDPNLWRTWEVDSSYMITENAGSAIKNSSNITYASMNDTSVAPLLVYETARAMSNTQVLDKRFNMSWKFEVDPDFDYLVRLHFCELMYDKSNERIFRIYINNRTAADNFDIFVRAGGMNKAYHQDHFDSASSRIDTLWVQLGPDTAAGAAGTDALLNGLEIFKLSRNGNLAYVERYNSADNSVSKSKARIWVGIGAGLASVAVIACIVVLVFCFCRRRKKESNDTKNNSPGWRPLFLYGGAAVNSTVGAKGSAGTQKLYGSVASTRVGKRFTLAEITAATNNFDDSLVIGVGGFGKVYKGEIEDGVPAAIKRANPQSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKNEMILVYEYMANGTLRSHLFGSDLPPLTWKQRLEACIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMSDFGLSKDGPAFEHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQINLAEWAMRWQRQRSLDKIIDPHLKGNYCPESLSKFGEIAEKCLADDGKSRPTMGEVLWHLEYVLQLHEAWLNMNNTETSFSSSQAISGPKDGGLEVMQEPSSQDEEVGLDLKQTTDGGGDKEVNAAI.	832

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g04400	831	FunFam	FERONIA receptor-like kinase	15	170	-	-
	Seca5g04400	831	FunFam	receptor-like protein kinase FERONIA	459	569	-	-
	Seca5g04400	831	SUPERFAMILY	Protein kinase-like (PK-like)	472	766	IPR011009	-
	Seca5g04400	831	PANTHER	OS07G0166700 PROTEIN	480	771	IPR045272	GO:0004714\|GO:0006468
	Seca5g04400	831	SMART	serkin_6	494	767	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g04400	831	Gene3D	Phosphorylase Kinase; domain 1	458	569	-	-
	Seca5g04400	831	Gene3D	-	193	377	-	-
	Seca5g04400	831	Gene3D	-	11	169	-	-
	Seca5g04400	831	Gene3D	Transferase(Phosphotransferase) domain 1	570	790	-	-
	Seca5g04400	831	ProSitePatterns	Protein kinases ATP-binding region signature.	500	522	IPR017441	GO:0005524
	Seca5g04400	831	FunFam	Receptor-like protein kinase FERONIA	570	784	-	-
	Seca5g04400	831	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	614	626	IPR008271	GO:0004672\|GO:0006468
	Seca5g04400	831	FunFam	Receptor-like protein kinase FERONIA	194	377	-	-
	Seca5g04400	831	MobiDBLite	consensus disorder prediction	784	831	-	-
	Seca5g04400	831	Pfam	Protein tyrosine and serine/threonine kinase	499	761	IPR001245	GO:0004672\|GO:0006468
	Seca5g04400	831	Pfam	Malectin-like domain	18	374	IPR024788	-
	Seca5g04400	831	ProSiteProfiles	Protein kinase domain profile.	494	766	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g04400	831	CDD	STKc_IRAK	500	765	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g04400	Seca-Chr5	101520723	101523257	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g04400	10	790	Receptor kinase-like Gene Family	AT1G30570	66.750	0.0	1110

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca5g04400		Malectin_like	1.2e-37	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g04400	-		-	gmx:100791403	1425.61