Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04399 ATGAAGCTCTTTAAACTTTTAGTGTTATCTTTATCTTTCTTCTCCGTTGTGGGGCAGCTTCCTTCCCAGGACATTTTAGCATTGCTGGAATTTAAGAAATGTATCAAGCATGACCCTACTGGTTATGTCCTAAATTCCTGGAATGAGGAATCCATTGACTTTGATGGATGCCCATCTTCATGGAATGGAGTTCTGTGTAATGGTGGTAGTGTTGCTGGGGTTGTTCTTGATAACTTGGGCCTCTCTGCTGATGCTGACTTGAGTGTTTTTTCAAACCTCACAAAGCTTGTGAAACTCTCCATGTCCAACAATTCCATATCTGGAAAACTACCTGAAAATATTGCTGATTTCAAAAGCCTTGAATTCCTGGATATCTCCAATAACCTCTTTTCCTCATCCTTACCATTGGGAATTGGTAACTTTGGTAGCTTGCAGAATCTGTCATTGGCTGGGAATAACTTCTCTGGCCCAATTCCTAACTCTATTTCAGAAATGGCTTCCATCAAATCCCTGGACTTGAGCCGCAACTCCTTGTCTGGAGCACTGCCAGCATCATTGACTAAGCTGCCTAGCCTTGTATCTCTTGACTTGTCTCATAATGGCTTCACTGGAAAAATTCCCAAAGGTTTTGACCAGGTTGCTACCCTTGAAAAACTTGACTTGCATGGGAATATGCTTAATGGTCCATTAGATGTTGAATTTATGCTTTTATCAACTGCAACCTATGTTGATTTCAGTGATAACATGTTGTCGAGTTCTGATTCCCAGCAGCAGAAGTTTCTTACTCGAATATCTGAAAGTATTAAGTATCTGAATCTTAGCCACAACCAGTTTACTGGGTCATTGGTTAGTGGAGCTGAGCAACCTGTTTTCCAAGACTTGAAGGTGTTGGACCTCAGCTACAATCAATTGAGTGGAGAATTGCCTGGATTTGATTTTGTTTATGATCTCCAGGTCCTTAAACTTAGCAACAACAGATTTTCAGGACTTATTCCTAATGGCCTACTAAAAGGAGACTCGTTGGTTTTAACTGAACTGGATTTGAGTGCCAACAATCTGTCAGGGCCATTAAGTATAATTACATCAACAACACTTCACTTTCTTAATCTCTCGTCAAATGGTTTCACTGGTGAGCTGCCACTACTGACTGGAAGCTGTGCTATACTTGATCTGTCAAATAACAAGTTAGAAGGAAATTTAACCAGGATGTTGAAATGGGGGAATATAGAATTTCTTGATCTCAGTGGGAATCATTTGACAGGGACCATCCCTGAAGAAACTCCTCAGTTTTTGCGACTAAATTATTTGAATCTATCCCATAATTCTCTTAGCAACTCCCTCCCAAGAGTCTTAACACAGTATCCAAAGCTTAGAGTGCTTGATATCAGTTCCAACCAATTAGATGGCCTACTTCTACCTGATCTTCTCTCAATGCCCACATTACAAGAGCTCCATCTTGAAAATAATATGATCTCTGGTGGCATCAATTTATCATCTTCTCATGGTCAATCTCATCTTCAAATTCTTGATCTTTCTCACAACCAGCTTAATAGCTATTTTCCTGATGAGTTTGGGTCATTATCTAGCCTGAAATTGCTCAATATTGCTGGAAATAATTTTTCTGGTTCTCTTCCAACCACCATTACTGACATGAGTTCTCTAGAGTCTCTGGATATATCAGAGAATCATTTTACTGGTCCTCTACCAAATAACATGCCAAAAGGTCTCAAAAGCTTTAATGCTTCACAAAATGATCTGGCTGGAGTTGTCCCAGAAGTTCTTAGGAAGTTCCCTAGTTCTTCTTTCTTTCCTGGGAATTCTAAGTTACATTTTCCAAATGGTCCTCCTGGATCAACCACATCATCTGCTGAAAGCTCCAAGAGGAAGCCAATGAACACTGTAGTTAAAGTAATAATTATTGTATCATGTGTGGTTGCTCTCTTCATATTAATCTTGCTGGCTGTCTTCATACACTACATACGTATGTCAAGATCTCCACCACCAGAAGATGATACAAGTAAGGATATCCGTCGGCGTCCTCAACCGATTATCTCTGGCCCTGTCCGTGCAACAGAAAGGGGTAATGCTTTGGTTGTTTCAGCTGAGGACCTTGTAACCTCACGTAAAGGGTCACCATCAGAGATAATCAGCCCTGATGAAAAAATGGCAGCTGTAACTGGGCTCTCCCCATCAAAACACAGCCACTTTTCATGGTCACCAGAATCTGGTGATTCATTTACTGCTGAAAATCTTGCAAGACTAGATACGAGATCACCAGATAGGTTGATTGGAGAGCTTCATTTTCTTGATGATACAATATCATTGACACCTGAGGAGCTCTCAAGGGCCCCGGCTGAAGTTTTGGGCAGAAGTAGTCACGGCACTTCTTACAAGGCAACTCTAGAGAATGGATTATTGCTGAGAGTAAAGTGGTTGAGAGAAGGAGTGGCAAAACAGAGGAAAGAATTTGTTAAAGAGATTAAAAAATTTGCAAACATCAGGCATCCAAATGTCGTGGGATTGAGAGGATATTATTGGGGTCCTACACAGCATGAGAAGCTTATTCTTTCAGATTTCATTTCACCAGGAAGTCTTGCAAGTTTTCTTTATGATCGACCAGGAAGAAAAGGTCCACCATTAACTTGGGCCCAGAGGCTCAAAATAGCAGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTTGATCGCGCTGTTCCTCATGGGAACCTCAAAGCTACAAATGTGTTGTTAGATACAACTGATATGAACGCCCGAGTTGCTGATTACTGTCTTCATCGACTCATGACTCAGGCTGGTACTATTGAACAGATTCTTGATGCTGGTGTGTTAGGTTATCGTGCACCAGAGTTAGCTGCATCCAAGAAGCCAATGCCCTCTTTCAAGTCAGATGTTTATGCTTTTGGGGTGATACTTTTGGAACTTTTAACTGGAAGATGTGCTGGTGATGTTATATCTGGTGAGGAAGGAGGTGTTGATCTTACAGATTGGGTAAGATTGAGGGTAGCAGAAGGTAGAGGCTCAGAATGTTTTGATGCTATCTTGATGCCAGAAATGAGTAATGCAGTTGTAGAAAAAGGAATGAAGGATGTCCTAGGAATAGCTATTCGATGCATCAGATCAGTTTCTGAAAGGCCTGGTATCAAGACTATATATGAAGATCTTTCTTCTATATAG 3195 0.4091 MKLFKLLVLSLSFFSVVGQLPSQDILALLEFKKCIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNGGSVAGVVLDNLGLSADADLSVFSNLTKLVKLSMSNNSISGKLPENIADFKSLEFLDISNNLFSSSLPLGIGNFGSLQNLSLAGNNFSGPIPNSISEMASIKSLDLSRNSLSGALPASLTKLPSLVSLDLSHNGFTGKIPKGFDQVATLEKLDLHGNMLNGPLDVEFMLLSTATYVDFSDNMLSSSDSQQQKFLTRISESIKYLNLSHNQFTGSLVSGAEQPVFQDLKVLDLSYNQLSGELPGFDFVYDLQVLKLSNNRFSGLIPNGLLKGDSLVLTELDLSANNLSGPLSIITSTTLHFLNLSSNGFTGELPLLTGSCAILDLSNNKLEGNLTRMLKWGNIEFLDLSGNHLTGTIPEETPQFLRLNYLNLSHNSLSNSLPRVLTQYPKLRVLDISSNQLDGLLLPDLLSMPTLQELHLENNMISGGINLSSSHGQSHLQILDLSHNQLNSYFPDEFGSLSSLKLLNIAGNNFSGSLPTTITDMSSLESLDISENHFTGPLPNNMPKGLKSFNASQNDLAGVVPEVLRKFPSSSFFPGNSKLHFPNGPPGSTTSSAESSKRKPMNTVVKVIIIVSCVVALFILILLAVFIHYIRMSRSPPPEDDTSKDIRRRPQPIISGPVRATERGNALVVSAEDLVTSRKGSPSEIISPDEKMAAVTGLSPSKHSHFSWSPESGDSFTAENLARLDTRSPDRLIGELHFLDDTISLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVAKQRKEFVKEIKKFANIRHPNVVGLRGYYWGPTQHEKLILSDFISPGSLASFLYDRPGRKGPPLTWAQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTTDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISGEEGGVDLTDWVRLRVAEGRGSECFDAILMPEMSNAVVEKGMKDVLGIAIRCIRSVSERPGIKTIYEDLSSI. 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04399 1064 FunFam Leucine-rich repeat receptor-like protein kinase 767 859 - -
Seca5g04399 1064 Gene3D Ribonuclease Inhibitor 21 290 IPR032675 -
Seca5g04399 1064 SMART LRR_typ_2 454 478 IPR003591 -
Seca5g04399 1064 SMART LRR_typ_2 314 338 IPR003591 -
Seca5g04399 1064 SMART LRR_typ_2 291 313 IPR003591 -
Seca5g04399 1064 SMART LRR_typ_2 189 212 IPR003591 -
Seca5g04399 1064 SMART LRR_typ_2 117 141 IPR003591 -
Seca5g04399 1064 SMART LRR_typ_2 165 188 IPR003591 -
Seca5g04399 1064 SMART LRR_typ_2 551 575 IPR003591 -
Seca5g04399 1064 SMART LRR_typ_2 93 116 IPR003591 -
Seca5g04399 1064 SMART LRR_typ_2 527 550 IPR003591 -
Seca5g04399 1064 SMART LRR_typ_2 504 526 IPR003591 -
Seca5g04399 1064 SMART LRR_typ_2 430 453 IPR003591 -
Seca5g04399 1064 SUPERFAMILY L domain-like 43 380 - -
Seca5g04399 1064 SUPERFAMILY Protein kinase-like (PK-like) 785 1061 IPR011009 -
Seca5g04399 1064 ProSiteProfiles Protein kinase domain profile. 782 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04399 1064 SUPERFAMILY L domain-like 268 594 - -
Seca5g04399 1064 ProSiteProfiles Leucine-rich repeat profile. 293 315 IPR001611 GO:0005515
Seca5g04399 1064 Pfam Leucine rich repeat N-terminal domain 22 67 IPR013210 -
Seca5g04399 1064 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 20 261 - -
Seca5g04399 1064 Gene3D Ribonuclease Inhibitor 291 627 IPR032675 -
Seca5g04399 1064 Pfam Leucine rich repeat 412 467 IPR001611 GO:0005515
Seca5g04399 1064 Pfam Leucine rich repeat 143 201 IPR001611 GO:0005515
Seca5g04399 1064 Pfam Leucine rich repeat 504 564 IPR001611 GO:0005515
Seca5g04399 1064 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 358 615 - -
Seca5g04399 1064 FunFam Pollen receptor-like kinase 1 860 1064 - -
Seca5g04399 1064 Gene3D Transferase(Phosphotransferase) domain 1 861 1064 - -
Seca5g04399 1064 PANTHER OS07G0626500 PROTEIN 7 1064 - -
Seca5g04399 1064 Gene3D Phosphorylase Kinase; domain 1 774 859 - -
Seca5g04399 1064 Pfam Protein tyrosine and serine/threonine kinase 786 984 IPR001245 GO:0004672|GO:0006468
Seca5g04399 1064 MobiDBLite consensus disorder prediction 607 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04399 Seca-Chr5 101495013 101501001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04399 3 385 Receptor kinase-like Gene Family AT4G36180 32.558 8.13e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca5g04399 PK_Tyr_Ser-Thr 2.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04399 - - gmx:100793639 1812.73