Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04388 ATGTGGACGAATGAGCCTTTATGGGTCAAGTCTCCTTCTGCTGATAGGAGGCTTGTTCTTGATTGTGAAAACTATCAAAAGTACTTCACTCGGGCTGATAATTTCACATTAGGCTGCAAATCTCGTTTTGAAACATCCAAAGATTCACGAATTGTCAACATTCATGCCATGAAATTGGTTGACATGCTTTTAGATACGGTGAAATGGGGTTGTATTTTCTCAACAATTATTACAAATTCGCAGTCAATGGAAGTGATTGAAACAGGTTCCCCACAGAACCTAAGTGGATCTTTGCAGATGATATATGAAGAGATGCACGTTCTTTCACCTTTAGTGCCACATCGGGAATTCTACTTGATTCGCTACTGTGAACAAGTTAAAGCTGGTATATGGGTGATAGTGAATGTATCTTTTGATCCCAAGAAAGAAGGACCTCATGCTTCTACTCGTAGGTTTCCCTCTGGATGCCTCATTCACCAAATCTCTGATACCTCTTCCGAGGTAATTTGGGTTGAGCACGTGGAAGTGGACGCAAAGGTGGAAACGCACAAGATGTACAGAGAGGTTGTTAACAACGGTTTTGCATATGGAGCACAAAGATGGCTTGTGGAACTTGAAAGAACGTCTGAGAGAATAAATTGCGTTGCACCTGGATACATACCTATGTATGACACCGGTGGTACGTGCGCTTCAGCTGATGGAAGGAAGAGTGTGATGAGGCTTACTCATAAAATGGTACGGAAGTTTTGTGGAAGTTTGAGCATGACAAGTAAGGTGAAGTTCCCAGCACATTTTGATCAGGAGGTGGAGCATTGCACTGGAATTAGGACCACTATTCGTAACAACCAAGACCCAAACATGCCAAATGAGACGGTTATTATTACTGTTTCTACCTCCTTTTGGCTCCCAATCCCTCCTGAGAATCTTTTCAACTTCTTTAAAGATCCTCTCAATCGTCCTCAGTGGGATGCTCTCTGCCATGGTAATGGAGTGATGGAGATAGCACACATCGCAAATGGAACTCATCCTAACAACTACATATCCATTATACAGCCTTTCCGTGTTGGCCTGAGCGATGTGGTGATTCTTCAAGAAAGTTTTATAGATCCGTTGGGAGCTTATGTGGTGTATTCTCCAATTAATATGACAGATCTAAACATGGCTGTAACCGGAGGAGATTCATTAGCGATATCAGTTCTTCCATCAGGCATTACCATCTCAGAGGACATGAATATTATTGATACTACTGGAAAGGGAAAAGCCGTTGTTGGTTTTGGTAGTAGCAGTACAAGAGGTTCACTCTCCTCTATCTCTTTCCAGATACTCATGTCTGCTTCAGATTCTGATAATCCGGACTCTATGCCTGCTGTTATTTCACTCATAACCTCAACAATCCAAAACATCAAGGAGGCTTTCATGATTTGA 1425 0.4204 MWTNEPLWVKSPSADRRLVLDCENYQKYFTRADNFTLGCKSRFETSKDSRIVNIHAMKLVDMLLDTVKWGCIFSTIITNSQSMEVIETGSPQNLSGSLQMIYEEMHVLSPLVPHREFYLIRYCEQVKAGIWVIVNVSFDPKKEGPHASTRRFPSGCLIHQISDTSSEVIWVEHVEVDAKVETHKMYREVVNNGFAYGAQRWLVELERTSERINCVAPGYIPMYDTGGTCASADGRKSVMRLTHKMVRKFCGSLSMTSKVKFPAHFDQEVEHCTGIRTTIRNNQDPNMPNETVIITVSTSFWLPIPPENLFNFFKDPLNRPQWDALCHGNGVMEIAHIANGTHPNNYISIIQPFRVGLSDVVILQESFIDPLGAYVVYSPINMTDLNMAVTGGDSLAISVLPSGITISEDMNIIDTTGKGKAVVGFGSSSTRGSLSSISFQILMSASDSDNPDSMPAVISLITSTIQNIKEAFMI. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04388 474 SUPERFAMILY Bet v1-like 235 408 - -
Seca5g04388 474 ProSiteProfiles START domain profile. 1 214 IPR002913 GO:0008289
Seca5g04388 474 SUPERFAMILY Bet v1-like 41 212 - -
Seca5g04388 474 SMART START_1 1 211 IPR002913 GO:0008289
Seca5g04388 474 Gene3D - 45 210 IPR023393 -
Seca5g04388 474 Pfam START domain 4 209 IPR002913 GO:0008289
Seca5g04388 474 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 3 472 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04388 Seca-Chr5 101394867 101396963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04388 1 472 Homeobox Transcription Factor Family AT1G73360 40.421 1.29e-114 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04388 K09338 - gmx:100794552 440.269