Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04387 ATGGATTTTCCAATGGGAGGTGCTGGTGGGTCTGGTGATGAAGACGCCCAAAACTCACACAAGGGAAAAAGACCCTCATACAAACGTCTTGATTCCACTCAAACATCCATACTTGAAAAATTCATCAAGGAATGTCCACATCCAGATGAAGCACAACGACGTCAATTAGCCGATGAGGTTGGGCTTGAGCCCAAACAAATTAAGTTTTGGTTTCAGAACAAACGGACTCAAATTAAGGTTCAACATGAGCGAGCAGATAACAATGCTCTTCGAGCTGAGAATGATAGGATGCTTAGCGAAAATCTTCTAATGAAAGAAGCACTAAAGAATACACTCTGCCCAGATTGTGGGGGTCCACCATTTCCTGAAGGGGAGCATGAGCTTTTCATGCAAAAAATGCAACGTGAAAATGCTAAACTAAAAGAAGAGTTTGAGAGGGTGTCTAACCTTCTTGCAAGGTATCTTGAGAAACACATGACAACACATGAGATGCAACAGACTTCCATTCCTATTACAGGACCTTCTTCACATGAGCTAACACTTAATGGAAGTTCAAGTTCATCACTTGGTCAAGGTCTCAACTTGCCCATTAGGGATAATCGTGTATTATTCAACAACTCAATCGAAAGTTCAGATATGGAAAAAGAATTGATGTCTGAGATTGCAACTTCTGCAATGGAAGAACTAGTTAAGCTTATACACATCAATGAGCCCTTATGGGTAATCTCTTCAGCTCAAAAAGAGAAACTCACTCTTCATCGTGAAACTTATGAGAGAATTTTCCCTAAGACTAATCACATGAAAGGTGCCAACGTGCCTCTAGAATCATCAAAAGATTCAGGAATAGTGAACATTAGTGGCAAGGAGCTAGTTGACATTTTTCTAGATGCAGACAAATGGGCAAACCTTTTCCCAGCGATTGTTACAAAAGCGGAAACAATCAAAGTATTTGAAAACGGTTTGTTAGGAAATCGAAGTGGAACCTTACAAATGATGTATGAAAAATTACATGTCCTTTCACATTTAGTGCGACCTCGTGAGTTTTACTTCCTACGTTATTGTCAGCAAGTTGACATTGGGGTGTGGGTGATAGCTGATGTGTCTTTTGACTCCATTCGAGTCAGCTCCCCTCTTTATCGCTCTTGGAGATATCCTTCTGGATGCATGATTCGTGAAATCGCTAATGGGCGTTGCATGGTCACTTGGGTTGAACATGTGGAAGTTGATGATAAAATTCATACTCATAGACTATATAGAGATCTTGTTGGTGTCAATGTTGCATATGGAGCGGGAAGATGGATATTGGAACTTCAAAGAATGTGCGAGAGATTTGCTTCTTTTTATGTTGAAAAGATACCTGATCATAAAACTGAAGGAGTACTCTATTCACTTGAGGGGAGGAAGAGTGTAATGAAGCTTGCTCATCGAATGGTTAAGACGTTCTGTGAAAGTTTAACCATGTCAGGTCATGAGCTAGATTTTCCACATTTAACAGTGGAAAACAATAGTGGGGTTAGGGTCAATGTTCGTAAGAGCGCAGGTATAGGCCAACCAAATGGTACAATTGTTATGGTTGCTACCTCTCTTTGGCTTCCTCTCCATTACGAGAATGTTTTTGAGTTCCTCACAGATCATAAAAGACGAGCTCAGTGGGATGTTCTTGCTTGTGGAAATCCAGTACATTTGGTTGCACACATTTCAAATGGAATTCATCCGGGAAACTGTATTTCAATTATTCAGCCATTCATCCCTAGTGAGAACAACACCGTGATTCTTCAAGAAAGTTTTATACATCCTATGGGATCATATATTGTATATGCTCCAACAGATGTAGCAGCCATGAATGCGGCCATGAGGGGCGAGGACTCTTCGGTGTTATCAATTCTTCCGTCAGGTTTTGTCATTTGTGCAGATGACCAACCAAAAGTAGATTTGGGAGCAATTGGCAATGGAAATATTGATAGATCAGGAGGCTCATTATTGACTGTGGTTTTCCAAGTAATAGCTAGTAGTCCAGATGGAATCAACCTTTTAAATATGGAATCTGTGGCAACTGTCAACACTCTTTTAACCTCGACGGTTCAAAGAGTAAGGGAAGCTCTAAACTAG 2109 0.4049 MDFPMGGAGGSGDEDAQNSHKGKRPSYKRLDSTQTSILEKFIKECPHPDEAQRRQLADEVGLEPKQIKFWFQNKRTQIKVQHERADNNALRAENDRMLSENLLMKEALKNTLCPDCGGPPFPEGEHELFMQKMQRENAKLKEEFERVSNLLARYLEKHMTTHEMQQTSIPITGPSSHELTLNGSSSSSLGQGLNLPIRDNRVLFNNSIESSDMEKELMSEIATSAMEELVKLIHINEPLWVISSAQKEKLTLHRETYERIFPKTNHMKGANVPLESSKDSGIVNISGKELVDIFLDADKWANLFPAIVTKAETIKVFENGLLGNRSGTLQMMYEKLHVLSHLVRPREFYFLRYCQQVDIGVWVIADVSFDSIRVSSPLYRSWRYPSGCMIREIANGRCMVTWVEHVEVDDKIHTHRLYRDLVGVNVAYGAGRWILELQRMCERFASFYVEKIPDHKTEGVLYSLEGRKSVMKLAHRMVKTFCESLTMSGHELDFPHLTVENNSGVRVNVRKSAGIGQPNGTIVMVATSLWLPLHYENVFEFLTDHKRRAQWDVLACGNPVHLVAHISNGIHPGNCISIIQPFIPSENNTVILQESFIHPMGSYIVYAPTDVAAMNAAMRGEDSSVLSILPSGFVICADDQPKVDLGAIGNGNIDRSGGSLLTVVFQVIASSPDGINLLNMESVATVNTLLTSTVQRVREALN. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04387 702 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Seca5g04387 702 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Seca5g04387 702 CDD homeodomain 21 82 IPR001356 GO:0003677
Seca5g04387 702 Coils Coil 80 100 - -
Seca5g04387 702 Pfam Homeodomain 27 79 IPR001356 GO:0003677
Seca5g04387 702 ProSiteProfiles START domain profile. 211 446 IPR002913 GO:0008289
Seca5g04387 702 SUPERFAMILY Homeodomain-like 23 89 IPR009057 -
Seca5g04387 702 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 702 IPR042160 -
Seca5g04387 702 MobiDBLite consensus disorder prediction 1 31 - -
Seca5g04387 702 Pfam START domain 221 443 IPR002913 GO:0008289
Seca5g04387 702 SUPERFAMILY Bet v1-like 212 445 - -
Seca5g04387 702 Coils Coil 130 157 - -
Seca5g04387 702 SMART HOX_1 23 85 IPR001356 GO:0003677
Seca5g04387 702 FunFam Homeobox-leucine zipper protein HDG1 10 97 - -
Seca5g04387 702 CDD START_ArGLABRA2_like 215 442 - -
Seca5g04387 702 Gene3D - 11 99 - -
Seca5g04387 702 SMART START_1 220 443 IPR002913 GO:0008289
Seca5g04387 702 Gene3D - 218 419 IPR023393 -
Seca5g04387 702 SUPERFAMILY Bet v1-like 500 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04387 Seca-Chr5 101379803 101384969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04387 23 702 Homeobox Transcription Factor Family AT1G73360 43.018 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca5g04387 START 5.4e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04387 K09338 - gmx:100795075 907.131