Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04386 ATGGAATTTTCTAATATGGAAAAGGCATTGATGTTTGAGATTGCAACTTCTGCAATGGAAGAACTAGTTAAGCTTTTGCGCATTAATGAGCATTTTTGGGTCAACTCATCGGCTCAAGATGGGAAACTCACCCTTCATCGTGAAACTTATGAAAAAATTTTCCCTCAGACTAATCACATGAAAGGTGAAAATGTGCATCTAGAATCATCAAAAGATTCAGGAGTAATGAATATTACCAGAAAGGAATTGGTTGATATATTTCTAGATGCGGAAAAATGGGCTGACTGCTTTCCAACAATTGTTTCAAAAGCAGAAACAATCAAAATATTTGAAACTGGTTTGGTGAAAAATCGAAGTGGAGCCTTGCACTTGATGTATGAAAAATTGCATACCCTTTCACCTTTAATGCGGCCTCGTGAATTTTATTTTCTTCGCCATTGTCAACAAGTTGACGCTGGGGTGTGGGTGATAACAGATATGTCTTATGACTTTTTTCGAGTCAACTCCCCTCTTTATCGCTCTTGGAGATACCTTTCTGGATGCATGATTCGTGAAATCTCTAATAAGTGTTGTGAGCTTATATGGGTTGAGCATGTGAAAGTGGATGATGAGATTCATACCCACCAACTATATAAAGATCTTGTTGGCGTCAATATTGCTTATGGAGCAAGAAGATGGATATTGGAACTTCAAAGAATGTGTGGGAGATTTTCTTCCTTTCGTGTTAAAAAGATACCTGATCAAGACTTTGGAGGAGTGATTGATTCAATTGAAGGGAGGAAAGGTGTAATGAATTTTTCTCATCAAATGGTTAAGACATTCTGTGAAAGTTTAACCATGTGCATTACTAACAACTTCCCACATTTAACTATAGGAAATAATAATGGGGTTAGAGTCAACGCTCGCAAAAGCATGGGTATAGGCCAACCAAATGGAACAATCATTATGGCTTCTACCTCCGTTTGGATTCCTTTCCATTATGAGAAAGTTTTTGAGTTTCTCATAGATCACAAAAGACGAGCTCAGTGGGATGTTATTGCTTGTGAAAATCCAATGCATTTGGTTGCACACATTTCAAATGGAATTCATCTTGGCAACTGTATTTCAATTATTCAGTCATCCATCCCTAGTGAGAACCACACCGTGATTCTTCAGGAAAGCTTTACACACCCCATGGAATCGTATGTTGTATATGCTCAAACTAATTTAGCATCTATGAATGTGGCTATAAGGAGTGAAGACTCTTCTATGTTATCAATTCTTCCATCAGGTTTTGCCATCTCTCCAAATGGCCAACCAAAAGAAACTTTATCAAGAGGCTCATTATTGATCGTGCTTTTCCAGGTATTAGCTAGTAGTCCAGATGAAAGTGAACTGCTAAATATGGAATTTGTTACAACTCTCAACACCTTTCTAAACTCAACAATTGAAAAGGTGAAGCAAGCTCTAAACTTTAATAGTGCGGAGTAG 1470 0.3748 MEFSNMEKALMFEIATSAMEELVKLLRINEHFWVNSSAQDGKLTLHRETYEKIFPQTNHMKGENVHLESSKDSGVMNITRKELVDIFLDAEKWADCFPTIVSKAETIKIFETGLVKNRSGALHLMYEKLHTLSPLMRPREFYFLRHCQQVDAGVWVITDMSYDFFRVNSPLYRSWRYLSGCMIREISNKCCELIWVEHVKVDDEIHTHQLYKDLVGVNIAYGARRWILELQRMCGRFSSFRVKKIPDQDFGGVIDSIEGRKGVMNFSHQMVKTFCESLTMCITNNFPHLTIGNNNGVRVNARKSMGIGQPNGTIIMASTSVWIPFHYEKVFEFLIDHKRRAQWDVIACENPMHLVAHISNGIHLGNCISIIQSSIPSENHTVILQESFTHPMESYVVYAQTNLASMNVAIRSEDSSMLSILPSGFAISPNGQPKETLSRGSLLIVLFQVLASSPDESELLNMEFVTTLNTFLNSTIEKVKQALNFNSAE. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04386 489 SUPERFAMILY Bet v1-like 6 236 - -
Seca5g04386 489 ProSiteProfiles START domain profile. 4 239 IPR002913 GO:0008289
Seca5g04386 489 Pfam START domain 14 234 IPR002913 GO:0008289
Seca5g04386 489 SUPERFAMILY Bet v1-like 289 480 - -
Seca5g04386 489 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 484 IPR042160 -
Seca5g04386 489 Gene3D - 12 213 IPR023393 -
Seca5g04386 489 SMART START_1 13 236 IPR002913 GO:0008289
Seca5g04386 489 CDD START_ArGLABRA2_like 8 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04386 Seca-Chr5 101365165 101373705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04386 1 488 Homeobox Transcription Factor Family AT1G73360 38.218 1.21e-122 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04386 K09338 - gmx:100795075 595.504