Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04373 ATGCATGTATCAAAAAGCTTAGGGGATTCTTTTACTCCATATTCTGCAAATGGTTGTGCTGAAAAGAATAAGAATCTGGTTGGAAGCAAAAGGAAAAGAAACAGTGAAAGGCTTAAAGAGAAAGAAAATGAAGTTATCCATGTAAGGGCAAAAAGAGGCCAAGCAACTGATAGTCACAGTTTAGCAGAAAGGGTAAAAGTTTAG 204 0.3627 MHVSKSLGDSFTPYSANGCAEKNKNLVGSKRKRNSERLKEKENEVIHVRAKRGQATDSHSLAERVKV. 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04373 67 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 66 IPR024097 GO:0006355
Seca5g04373 67 MobiDBLite consensus disorder prediction 25 43 - -
Seca5g04373 67 MobiDBLite consensus disorder prediction 1 43 - -
Seca5g04373 67 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04373 Seca-Chr5 101189049 101189372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04373 32 66 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 62.857 3.09e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04373 - - lja:Lj2g3v1141850.1 111.694