Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04372 ATGATTCTGCAATTTGCATTTCATGTGAATATCATCATTTTCATAATATGGCTGATATCTCCACTGGCATCCGCACGAGATTGGATTACATCACAACCTGGTTGTGATTCGTCATGTGGAACAATTGATATCCCTTTCCCATTTGGAATGCAAGATCCAAAATGCTATGCAGATAAATGGTTTGAAATAGAATGCAGAAACAGTACTTCTGAAGGTGAGAAGCCTTACTTGAAGTCTTTAAATCTTGAGGTGAGATATATTTATGTGAGCCTGGGCTTGATTGATGTCATGAATCCAATTACCCATTCGAATTGCCGAACCAATAACAGAAACAAGGCAGGCATAACCTACCTGAGAGGAAGCCCTTTTGTATATTCCCAAGAGGAAAACACATTTGTGGCAGTTGGTTGCAACAATCTTGCTTTTCTGCACTCAAATGGAACAACCGTTGGTGGTTGTGTGTCCATTTGTGATGATAATGAACAAGTGGACAATAACTTTGATTTTGAAAGTGAGGGTTGCCATGGCAGGTACTGTTGCCAGACTTCACTGCCTATGCATCTTTCAGAGTTCAACGCGACACTTGAAGATCTAAGGAGTGGAAGTAGGAGGAATCATACAGAGGAGGAGTGTAGTTATATGATGATTGTAAGTGATGATTGGATCTCGTTCCAGAGTAACTATATGTCTTATTCGGAAGTTGAGAGATTTAGTGAGCTGAAGAACATGGATTATGTTCCAGCGGAGCTTGAGTGGGAGATTTTGAACGAGATGCTCATCAATTCCACTCTGAAACTCCCTTCAGAAGCTCACTGCTATAAGACGAATGTCACATCTTCAGATAACAGATACTCAGGTTGGAGATGTCAGTGCCCCACAGGCTACTATGGCAATCCTTACATCTCTAGAGGCTGCACCGCTATACCAGGGTTCTTTGATAAGAATAATCAGGCGAAGAAGTGGGCTATAGTAGGAGTTTTGTCAAGTCTCGGATCCATCATTTTGCTCTTTGGTCTATGGTTGTTATATAAAGTTGTAAGGAAAAGAATGATAAAGAAACGCAGAGAAAAGTTCTTCAAAAAAAATGGTGGATTGTTGTTACAACAAAGAATGTCTTCTGGAGAAGTTAATGTGGACAGAGCTATTATGTTCAGCCTAAAAGACTTAAAGAAGGCCACTGACAACTTTAATATGAACAGAGTTCTTGGAAAAGGAGGGCAAGGTACTGTTTATAAAGGCATGCTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGTTCAAGGTTGAAGGAAAGATTGAAGAATTCATCAACGAGTTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTCAAGTTATTAGGATGTTGTTTGGAGACAGAAATTCCCTTGCTTGTTTATGAATTCATTCCCAATGGTAATCTTTTTGAATATTTGCATCACCAAAATGAGGACATACCAATGACATGGGATATGCGTTTGAGAATTGCAACAGAAATTGCAGGAGCTCTATTTTACTTACACTCCATTGCATCTCAACCCATTTATCACAGAGACATCAAATCAACAAATATACTGTTGGATGAAAAGTACAGGGCAAAATTAGCAGACTTTGGAGCATCAAGAATAATTTCCATTGAAGCTACTCATCTCACCACAGTAGTTCAAGGTACTTTTGGATATCTGGACCCAGAATATTTTCATACTAGTCAATTTACAGAAAAAAGTGATGTTTATAGCTTTGGGGTTGTTCTTGCTGAACTTTTAACTAGTCAGAGACCAATATCCTCTGTAAGGTCTGGGGAATCCAAGAATTTAGCTTCATATTTTGTTCAATGTTTGGAGGAGAATAGTCTGTTTGACATTATTGATAAAAGGATTATGAAGGAAGGGGAGAAAGAACATATCTTTGCAGTTGCCAATCTTGCAAATAGATGCTTAGAGTTAAATGGGAAAAAACGACCAACTATGAAAGAAGTGACATTGGAACTAGAAGGGATCCGAGGATTGAATAAGAAGTCTGATGTGCAGCAAGACCATGAAGAAATTGAGCTTGTTGGAATTGAAGACCACCAACCTTGGACTGGATATTCCACATCAAATTCATTGCCAAATCTAAACAGTGGAACGTGGTCCTCAAACTCCAACTCGGAGGTTATACCTATTCTTACATTACAATAA 2181 0.3851 MILQFAFHVNIIIFIIWLISPLASARDWITSQPGCDSSCGTIDIPFPFGMQDPKCYADKWFEIECRNSTSEGEKPYLKSLNLEVRYIYVSLGLIDVMNPITHSNCRTNNRNKAGITYLRGSPFVYSQEENTFVAVGCNNLAFLHSNGTTVGGCVSICDDNEQVDNNFDFESEGCHGRYCCQTSLPMHLSEFNATLEDLRSGSRRNHTEEECSYMMIVSDDWISFQSNYMSYSEVERFSELKNMDYVPAELEWEILNEMLINSTLKLPSEAHCYKTNVTSSDNRYSGWRCQCPTGYYGNPYISRGCTAIPGFFDKNNQAKKWAIVGVLSSLGSIILLFGLWLLYKVVRKRMIKKRREKFFKKNGGLLLQQRMSSGEVNVDRAIMFSLKDLKKATDNFNMNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKIEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHHQNEDIPMTWDMRLRIATEIAGALFYLHSIASQPIYHRDIKSTNILLDEKYRAKLADFGASRIISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTSQRPISSVRSGESKNLASYFVQCLEENSLFDIIDKRIMKEGEKEHIFAVANLANRCLELNGKKRPTMKEVTLELEGIRGLNKKSDVQQDHEEIELVGIEDHQPWTGYSTSNSLPNLNSGTWSSNSNSEVIPILTLQ. 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04372 726 Gene3D Transferase(Phosphotransferase) domain 1 470 691 - -
Seca5g04372 726 Pfam Wall-associated receptor kinase galacturonan-binding 35 87 IPR025287 GO:0030247
Seca5g04372 726 FunFam Wall-associated receptor kinase 2 366 469 - -
Seca5g04372 726 Pfam Protein kinase domain 397 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04372 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Seca5g04372 726 Gene3D Phosphorylase Kinase; domain 1 363 469 - -
Seca5g04372 726 ProSiteProfiles Protein kinase domain profile. 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04372 726 SMART serkin_6 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04372 726 CDD STKc_IRAK 402 667 - -
Seca5g04372 726 SUPERFAMILY Protein kinase-like (PK-like) 382 662 IPR011009 -
Seca5g04372 726 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 674 IPR045274 GO:0007166
Seca5g04372 726 FunFam Wall-associated receptor kinase 2 470 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04372 Seca-Chr5 101173576 101176490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04372 11 706 Receptor kinase-like Gene Family AT1G16260 43.194 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca5g04372 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04372 - - mtr:11415953 1006.13