Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04371 ATGGTTGTGCAACTTGCATTTTACATAATCATAGGGTCCATATTTCCACTGGCATCAACACAAGATCCAATTACTGCACATCCCAATTGTGATTCAAGATGTGGAACTGTTGCAATACCTTTCCCGTTTGGAATGAACGATCCAAAATGCTATGCAGACAAATGGTTTGAAATAGAATGCAGGAACACTTCTCAAGGCCATCAGACACCGTACCTGAAATCTATAAATCTGGAAGTAACAGTAATTGATCCAACGGACAGCAAAGTTCGGATCATGAATCCAGTTTTCCGTTGGAACTGCCAAAGCAACGATGCTCGACCAGTCGTAAACCTCAAAGGAAGCCCTTTTGTGTATTCCAAAGATGATAACAAATTCACTGCCATTGGTTGCAATAAGATCGCGTTTTTGCAATCAAAAGGTTCTCAAGCTAGTGGCTGTGTCTCCGTTTGTGATGAGTACGACAACAATGAAGTTAACAACGACATCGCGTTTGGAACCGATGGTTGCGTTGGCAGGTTCTGCTGTGAGACTTCGCTGCCGTCGTTTCTTTCGGAATTTAATGTGACAGTTGAAGATCTAAGAAACAAAAGTGGGAGTAGTGAACAGTGCAGTTACGCGCTTATTGGAACGGAATATTGGTACCGAATACCGTTTGGGTCTTCTTTCGAGTATCGAAGTTTTCGTGACCTTGGTAATTTGGATTATGTTTCAGCGATGCTTGAGTGGGTGGTTTTTAACTCCTCTAACCTGAAACTCCCAGTAGATAGTGCCAATTGCACTGAAATTGCATCCGCACAAAATAGACCCTTTGGTTGGAGATGTGAGTGCTACACAGGCTACAGTGGCGATCCCTACATTACTGGGGGCTGTATAGCTATTGATGGTCCCTCTGATAAGAAAACTCGAGCTAAGTGGGCTATAGTAGGAGTTTCTGCAAGTCTTGGATCCGTCATTTTACTCCTTAGTATATGGTGGTTGTGTAAAGTGGTGAAGAAAAGAATGATACAGAAACGCAGGGAAAATTTCTTTAAACAAAATGGTGGTTTATTGTTACAACAAAGATTGTCTTCTAGTGAGGTTAATGTTGATAGAGTGAAACTGTTCAGCTTAAATGACCTAGAAAAAGCCACCAACCACTTCAATACAAACAGAGTGATTGGGAAAGGAGGCCAAGGTACTGTTTACAAAGGTATGCTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGCTTAAGGTAGAAGGGAAGGTTGAAGAATTCGTCAATGAATTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTATTAGGGTGCTGTTTGGAGGCAGAGATTCCTTTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTTTGAGTATTTGCATGATCCAAACGAGGAGTTACCTATAACATGGGATATGCGTTTGAGAATTGCCACAGAAATTGCAGGAGCTTTATTTTACTTACATTCAGTTGCATCTCAACCCATTTATCATAGGGACATCAAATCAACAAATATACTATTGGATGAAAAGTATAGAGCAAAAGTGGCAGACTTTGGAACATCAAGAATGATTTCCACTGAGGCTACTCACCTCACCACAGTAGTTCAAGGTACTTTTGGATACTTGGATCCAGAATACTTTCATACTAGTCAATTTACAGAAAAAAGTGATGTGTATAGCTTTGGAGTAGTTCTTGTTGAACTTTTGACTGGGGAAAAGGCAATATCCTCTGTAAGATCCCAAGAGGTGAAAAGTTTAGCATCATATTTCAATATCTCTATAGAGGAAAATCGTCTATTTGACATTATTGATAAAAGAGTCATGAAGGAAGCGGAGAAAGAACATATCATAGCAGTTGCCAATCTTGCTAATAGATGTTTGGAGCTAAATGGGAAAAAAAGACCAACAATGAAAGAAGTTACATTTGAATTAGAAGCGGTTCGTGAATTAAACAGGAAGTTTGATGCACATCAAAATCATGAAGAAATTGAGCTTGCTAGAATTGAAGACTACCAACCTTGGGCTAGATATTCTACATCAAATTCATTGCCACATCTAAGTAGCGGAACATTCTCTTCAAACTCGGAGGTTCTTGATATTCTTACATCAAAGTAA 2127 0.3916 MVVQLAFYIIIGSIFPLASTQDPITAHPNCDSRCGTVAIPFPFGMNDPKCYADKWFEIECRNTSQGHQTPYLKSINLEVTVIDPTDSKVRIMNPVFRWNCQSNDARPVVNLKGSPFVYSKDDNKFTAIGCNKIAFLQSKGSQASGCVSVCDEYDNNEVNNDIAFGTDGCVGRFCCETSLPSFLSEFNVTVEDLRNKSGSSEQCSYALIGTEYWYRIPFGSSFEYRSFRDLGNLDYVSAMLEWVVFNSSNLKLPVDSANCTEIASAQNRPFGWRCECYTGYSGDPYITGGCIAIDGPSDKKTRAKWAIVGVSASLGSVILLLSIWWLCKVVKKRMIQKRRENFFKQNGGLLLQQRLSSSEVNVDRVKLFSLNDLEKATNHFNTNRVIGKGGQGTVYKGMLVDGKIVAVKKLKVEGKVEEFVNEFVILSQINHRNVVKLLGCCLEAEIPLLVYEFIPNGNLFEYLHDPNEELPITWDMRLRIATEIAGALFYLHSVASQPIYHRDIKSTNILLDEKYRAKVADFGTSRMISTEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLTGEKAISSVRSQEVKSLASYFNISIEENRLFDIIDKRVMKEAEKEHIIAVANLANRCLELNGKKRPTMKEVTFELEAVRELNRKFDAHQNHEEIELARIEDYQPWARYSTSNSLPHLSSGTFSSNSEVLDILTSK. 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04371 708 SMART serkin_6 380 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04371 708 Pfam Wall-associated receptor kinase galacturonan-binding 30 92 IPR025287 GO:0030247
Seca5g04371 708 Gene3D Transferase(Phosphotransferase) domain 1 454 675 - -
Seca5g04371 708 SUPERFAMILY Protein kinase-like (PK-like) 357 648 IPR011009 -
Seca5g04371 708 FunFam Wall-associated receptor kinase 2 454 671 - -
Seca5g04371 708 ProSiteProfiles Protein kinase domain profile. 380 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04371 708 CDD STKc_IRAK 386 656 - -
Seca5g04371 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Seca5g04371 708 FunFam Wall-associated receptor kinase 2 350 453 - -
Seca5g04371 708 Pfam Protein kinase domain 381 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04371 708 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 659 IPR045274 GO:0007166
Seca5g04371 708 Gene3D Phosphorylase Kinase; domain 1 351 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04371 Seca-Chr5 101156442 101159712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04371 1 702 Receptor kinase-like Gene Family AT1G16260 44.262 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca5g04371 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04371 - - gmx:100798794 913.294