Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04370 ATGTTAAATAAACGCAAAGAAAAGTTCTTCAAACGAAATGGAGGTTTGTTGTTAGAACAAAGATTGTCCTCTGGTGAAATTAGTGTTGATAAAGTTAAACATTTCAGCTTAAAGGAATTAGAGAAGGCAACAGATTACTTCAATATCAACAGAGTACTTGGAAAGGGAGGTCAAGGTACCGTGTACAAGGGTATGCTAGTGGATGGAAAAATTGTTGCAGTAAAAAAGTTTAAGGTTCAAGGAAAGGTTGAAGAATTCATCAATGAATTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTGTTGGGGTGTTGTTTGGAGACAGAAATTCCTTTGCTAGTCTATGAATTCATTCCTAATGGTAACCTTTACGAATATTTGCATGAACAAAATGATGACTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACAGAAGTTGCAGGAGCTCTATTTTACTTACACTCAGCTGCTTCTCTGCCTATTTATCATAGAGACATCAAGTCCACAAATATACTGTTGGATGGAAAGTATAGGGCAAAAGTAGCAGACTTTGGTACATCAAGAATGGTTTCCATTGAAGCTACTCACCTCACCACAATAGTTCAAGGAACTTTTGGATACTTGGACCCTGAATATTTCCATACCAGTCAATTTACAGAAAAGAGTGATGTCTATAGCTTTGGAGTAGTTATTGTTGAACTTCTAACTGGGCAAAAGCCAATATCCTCCCTAAGACCAGAAGAAGCCAAAAGTTTGGCAGCATATTTCGTTCTCTTTATGGAGGAAAATCGTCTGTTTGATATTATTGATGAAAGAGTTACAAAGGAAGGGGAGAAAGAACATGTCATTACAATTGCCAATCTTGCATGTAGATGCTTAGAGTTGAATGGGAAAAAACGGCCAGCCATGAAAGAAGTTACATTGCAATTAGAAGGGATCCGAAAATTGGTTGAAAGGAAGTCTAATGCAGAGGAAAACCATGATGAACTTGAGCTTGCTAGAATTGAAGACTATCAATCTTGGGGTACATATTCTACTTCAAATTCAGGGCTAACTCTATCAACCTTGGAAGTTATGCCTATTATGGATGAAATTCCTTAA 1116 0.3674 MLNKRKEKFFKRNGGLLLEQRLSSGEISVDKVKHFSLKELEKATDYFNINRVLGKGGQGTVYKGMLVDGKIVAVKKFKVQGKVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLYEYLHEQNDDLPMTWDMRLRIATEVAGALFYLHSAASLPIYHRDIKSTNILLDGKYRAKVADFGTSRMVSIEATHLTTIVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVIVELLTGQKPISSLRPEEAKSLAAYFVLFMEENRLFDIIDERVTKEGEKEHVITIANLACRCLELNGKKRPAMKEVTLQLEGIRKLVERKSNAEENHDELELARIEDYQSWGTYSTSNSGLTLSTLEVMPIMDEIP. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04370 371 Gene3D Phosphorylase Kinase; domain 1 19 120 - -
Seca5g04370 371 FunFam Wall-associated receptor kinase 2 17 120 - -
Seca5g04370 371 Pfam Protein tyrosine and serine/threonine kinase 48 314 IPR001245 GO:0004672|GO:0006468
Seca5g04370 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Seca5g04370 371 ProSiteProfiles Protein kinase domain profile. 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04370 371 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 325 IPR045274 GO:0007166
Seca5g04370 371 FunFam Wall-associated receptor kinase 2 121 338 - -
Seca5g04370 371 SUPERFAMILY Protein kinase-like (PK-like) 27 315 IPR011009 -
Seca5g04370 371 CDD STKc_IRAK 53 318 - -
Seca5g04370 371 SMART serkin_6 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04370 371 Coils Coil 318 338 - -
Seca5g04370 371 Gene3D Transferase(Phosphotransferase) domain 1 121 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04370 Seca-Chr5 101146190 101147305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04370 9 323 Receptor kinase-like Gene Family AT1G79670 66.562 1.14e-151 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca5g04370 PK_Tyr_Ser-Thr 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04370 - - gmx:100801993 577.015