Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04359 ATGGGAAGACACTCTGTTGGTGGACATGAAAATGGAGAAGAAGCTAGTGTGGGCAATAGTAGACACCGAAGACAAAGACGACTAAGGAACCTTACGAACGGAGAAATGTTTATTAATCAAGGTGATTTTGATGAAGAAGGAGAGGAAGGAACTGAAAATGCTAACAATATAGATGATGCTAATATGGAGCATGGTAAGACTAATGGCCTTGTACCCACCGTGAATGATCTTGATCGACAGATGATTTCTCCAGCATATGCAATGATTTGCGACACACGCATGCTTGATTGTTGTGTTTGTTTCAAGCCTTTGAGTTCTCCTGTCTTTCAGTGCATTGATGGGCATATTACTTGTAGCACTTGTTGTCACATATTTAGGAATAAGTGCACCATATGCTTTTTGCCCAACCATAGTCGGTGCCATGCTATAGAGAAACTATTAGAATCTATCAAAATAGCATGCGACAATCAAGAATATGGGTGTAATTCAATAGTGAGGTATAGTGAGAAATATGCACATGAGAAGACATGCATCTTTGAACCATGTTTATGTCCCCAGGAAGGTTGCAACTTTTTTTTCAATTCCAGTGAGTTGGTCACGCATTTCAAGAACAACCATCTTCCTGAGGAAACACCATTTAAATATGATGCATTTTTCATGACCTCATTACACATTAACAAGAACACTGTTGTTCTTCAAGCATTAACTGATGGAGAACTTTTTGTTATCAATAACAAGGTTGAGCCTTTGGGGAACGCTCTCACTCTATGTCACATTGGGCCCAATAAAATGAACCCACAATTTGATTTTGAAATGTCGGTTGAGTCTCAACAAGGATGGAACTCTTTAACTCTACAATCAAAAGTGATGAACACTCAACGTGGCAAACCTGGTTCATCATCAATGTTCCTTTTGGTTCCGTTTGAGTTTTCTCAACCTTCTGGAGAACTCGAGATAGAAATTCGCATAAGAATGATTGGTGTTGTGCAGCCTTCCAAGTTTACATGA 1008 0.3919 MGRHSVGGHENGEEASVGNSRHRRQRRLRNLTNGEMFINQGDFDEEGEEGTENANNIDDANMEHGKTNGLVPTVNDLDRQMISPAYAMICDTRMLDCCVCFKPLSSPVFQCIDGHITCSTCCHIFRNKCTICFLPNHSRCHAIEKLLESIKIACDNQEYGCNSIVRYSEKYAHEKTCIFEPCLCPQEGCNFFFNSSELVTHFKNNHLPEETPFKYDAFFMTSLHINKNTVVLQALTDGELFVINNKVEPLGNALTLCHIGPNKMNPQFDFEMSVESQQGWNSLTLQSKVMNTQRGKPGSSSMFLLVPFEFSQPSGELEIEIRIRMIGVVQPSKFT. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04359 335 ProSiteProfiles Zinc finger SIAH-type profile. 149 207 IPR013010 GO:0008270
Seca5g04359 335 MobiDBLite consensus disorder prediction 1 21 - -
Seca5g04359 335 MobiDBLite consensus disorder prediction 1 63 - -
Seca5g04359 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 202 IPR013083 -
Seca5g04359 335 Pfam Seven in absentia protein family 139 293 IPR018121 GO:0005737|GO:0006511|GO:0007275
Seca5g04359 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 51 326 IPR044286 -
Seca5g04359 335 SUPERFAMILY TRAF domain-like 149 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04359 Seca-Chr5 101015580 101018622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04359 94 206 C3H Transcription Factor Family AT2G41980 36.207 1.42e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04359 K04506 - gmx:100778869 218.779