Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04347 ATGTGCAGCATCTTTGTCCCAGTCATGGACAATTACCAAGGCGATTTAACTGACATACTTCGTGCTAGTGGTGGAGCATACGGCACCACCTGCAGCACAGGAACTACTCCATCATCTCCTCAACCACCACCTCATAATCCTCTCTCTCATCACTGGCAGCAGCAGCACCAACAACAACAGTTCTCTTCTGATCCTTTGAGTTTCTCTAATTCTGTTCTGGAAGATCCTAGAGGAGGAGGAGGAGGCACCTACTTTGGTGATCCATTCTCAACCATGAGAGATCCCTTCTTACAAGAGCTTGATATGCCTCCTTCTTCTAATTCCTACTTCAACTCCTCTGCAGGGGGCTTGGAACAAGCAACAGTACCTGCTACTGCTACTGCTACTTTTGGTGTTAGTGTTAGTGATCATAATATTAATACTAGTTCCTCTTCTTCTTGTTCTACTTCTTCTACTTGTGTTTTTGCACACAAGGTTGTTGAAGATGAGATGATGAGAAGGCCTTGTAAGAACATATTCTCAAACATGATTCAGATCTCTCCCAATGCAAACTTACCAGCTTATCATGATTCACCTTCCCCGAGAGCAATTAAGCCTTCTCTTGTGGTTTCACCAAACATGATTAATGCTAATACCTCCAAGGATTGTCTTATGGACAACACACAAGTTCAGATCTCATCTCCACGGAATCCGGCTCTTAAGCGAAGGAAGAACCAGGCGAAAAAGGTGGTTTGTATCCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTATTATAGATGCAGCAGCTCAAAGGGTTGTTCTGCAAGGAAGCAAGTTGAGAGGAGCAGAACAGATCCAAACATGTTGGTTATTACTTACACTTCAGAGCATAACCATCCATGGCCAACTCAGAGAAATGCTCTGGCTGGTTCAACAAGATCCCAACCATCCAAGAACAATGCTGCCTCTGGTTCTTCCAAGAATACTTCAGAAGCCTCTCAAAAGGGGACAACAAAGCCAAAGGAAGAGCAGCAAGAGAGCAATAGTGAAGGAAATAACTCCCCAGTTGTTGCAGCTGGGAACTCAGGAAACAGTGTGAAGGAAGAGATGGAAGATATAGAGAAGCAGCTTGAGATGGAGGATGGAGAATTCAGTGATGGACTTCCTTATAAGCCATCTTTGATGGAGAGTAACCAGTCATCAGAGGATTTCTTTGCAGAATTGGGAGAAATAGAAGCTGATCCATTGAACCTTTTGTTTAGTCAAGGTTTTGGTGATCAAAGGGATCAATCCAAGGCATTAGATCCATTCCATCTGTTTGACTGGTCAGGAGATAATCACAACAATACCAACTCATTGGAAGAACCTAATAAGAGAAGGTTATAA 1449 0.4362 MCSIFVPVMDNYQGDLTDILRASGGAYGTTCSTGTTPSSPQPPPHNPLSHHWQQQHQQQQFSSDPLSFSNSVLEDPRGGGGGTYFGDPFSTMRDPFLQELDMPPSSNSYFNSSAGGLEQATVPATATATFGVSVSDHNINTSSSSSCSTSSTCVFAHKVVEDEMMRRPCKNIFSNMIQISPNANLPAYHDSPSPRAIKPSLVVSPNMINANTSKDCLMDNTQVQISSPRNPALKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNAASGSSKNTSEASQKGTTKPKEEQQESNSEGNNSPVVAAGNSGNSVKEEMEDIEKQLEMEDGEFSDGLPYKPSLMESNQSSEDFFAELGEIEADPLNLLFSQGFGDQRDQSKALDPFHLFDWSGDNHNNTNSLEEPNKRRL. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04347 482 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 129 441 IPR044810 GO:0003700
Seca5g04347 482 MobiDBLite consensus disorder prediction 287 422 - -
Seca5g04347 482 MobiDBLite consensus disorder prediction 306 356 - -
Seca5g04347 482 Gene3D WRKY domain 236 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g04347 482 MobiDBLite consensus disorder prediction 30 88 - -
Seca5g04347 482 SMART WRKY_cls 262 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g04347 482 MobiDBLite consensus disorder prediction 368 382 - -
Seca5g04347 482 SUPERFAMILY WRKY DNA-binding domain 260 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g04347 482 ProSiteProfiles WRKY domain profile. 257 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g04347 482 MobiDBLite consensus disorder prediction 461 482 - -
Seca5g04347 482 FunFam probable WRKY transcription factor 14 236 316 - -
Seca5g04347 482 MobiDBLite consensus disorder prediction 48 70 - -
Seca5g04347 482 Pfam WRKY DNA -binding domain 264 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04347 Seca-Chr5 100916327 100919265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04347 1 482 WRKY Transcription Factor Family AT1G30650 40.945 6.52e-95 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca5g04347 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04347 - - aprc:113852911 613.224