Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04341 ATGGCCATAGAATCTAAGGCTGCCACCACTCCACAGTTGACGCTGGCTGATACAGATATCAACTGGGACAGGTTGAATAAGACAAAGTTTCACGTGATTGGCGCCATACTCTTCACTGCTCAATCAGCGTTGCTTCATCCAACGGCGGTGGTGAAGACGAGGATGCAAGTAGCAGGTTCTGGACTCTCTCACATGAAAGGAATGTCAGTGTTCACTCACATTTTGCGGAGTGATGGTATTCCTGGAATCTTTAGAGGTTTTGCCACTTCTGCTATTGGATCAATGCCTGGCAGGGTGTTAGCTCTCACATCACTTGAAATGTCAAAGGACTTTGTGTTAAAACACACTCAAGGTACTAGTCACTTGCCAGAAGCATCACGTCTTGCCCTTGCAAATGGAGTGGCTGGCATGGTTTCAAACCTGGTTTCTTGTGTATACTTTGTCCCTTTGGATGTGATCTGCCAGAGGTTAATGGTACAAGGTCTTCCGGGAACTGTATGTTGTAGAGGACCGTTTGATGTTATCTGTAGAGTTGTGAAGGCTGAGGGTATTCGTGGCTTGTATAGAGGTTTTGGATTAACAGCTGTAACCCAGTCACCAGCATCTGCACTTTGGTGGGGTTCATATGGTGCAGCACAACACATAATTTGGAGGTACATACATTCTTCTGTCTTGAGTTTGGGCTACAAAGATGAGATGGAGAACAAACCTTCACAAGTGGAAATGATGACAGTTCAGGCCACTGCTGGGATGGTGGCTGGTGCTTGTTCCTCTGTTATCACTACCCCTATAGATACTGTAAAAACATGTCTTCAGGTTATGGACAACTATGGTCCTGGAAGACCATCAGTACTGAAGACAGCAAAGACTCTCCTTAAGGAAGATGGATGGTGGGGATTTTACAGGGGTTTTGGACCAAGATTTTTAAATATGTCACTTTATGGAACAACGATGATTGTTACTTATGAACTGATAAAGAGATTATCAGTAAACCAAGTCTGA 1002 0.4431 MAIESKAATTPQLTLADTDINWDRLNKTKFHVIGAILFTAQSALLHPTAVVKTRMQVAGSGLSHMKGMSVFTHILRSDGIPGIFRGFATSAIGSMPGRVLALTSLEMSKDFVLKHTQGTSHLPEASRLALANGVAGMVSNLVSCVYFVPLDVICQRLMVQGLPGTVCCRGPFDVICRVVKAEGIRGLYRGFGLTAVTQSPASALWWGSYGAAQHIIWRYIHSSVLSLGYKDEMENKPSQVEMMTVQATAGMVAGACSSVITTPIDTVKTCLQVMDNYGPGRPSVLKTAKTLLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSVNQV. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04341 333 Gene3D Mitochondrial carrier domain 168 332 IPR023395 -
Seca5g04341 333 Pfam Mitochondrial carrier protein 32 115 IPR018108 -
Seca5g04341 333 Pfam Mitochondrial carrier protein 130 217 IPR018108 -
Seca5g04341 333 Pfam Mitochondrial carrier protein 245 330 IPR018108 -
Seca5g04341 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 241 328 IPR018108 -
Seca5g04341 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 127 215 IPR018108 -
Seca5g04341 333 SUPERFAMILY Mitochondrial carrier 23 324 IPR023395 -
Seca5g04341 333 Gene3D Mitochondrial carrier domain 15 163 IPR023395 -
Seca5g04341 333 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 11 331 - -
Seca5g04341 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 28 111 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04341 Seca-Chr5 100841794 100844495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04341 17 328 Chloroplast and Mitochondria Gene Families AT5G15640 47.756 2.01e-101 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04341 K15121 - gmx:112997745 542.347