Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g04339 | ATGGCCCTTCATTCAAATTTCACCTTATGTGACCTGGGATTTGTTGCTTATTGGCTCCGCCTCTTATGTCTTTTTTGCCTTTTTTTATTGCCTCAAGTTGCTTCAATATATTCTGCTGGCTTCTCGAACCCCACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATCGTGGCGATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTAATGCCTGCATTCATTCTTCTTAGACAGCGACGTAATAATCCTCTGAATGGCCCAACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGGACGGTCTTCACGAGTCTCTTGCACGTGTTTGTATGGTGGAGCACCTAAAGCCCTTCAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTCAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCGCGTAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCCGGCGATCTTCTTGTCAATCCCGTTCAGGTTAACATTGGAAGTGTAGATGAGCTCGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGACGTTTGGAGCAGATCCTCAGATCTCAAGAACGAGGTTCTAAGATCATAATATTTTGTTCCACAAAGAGATTATGTGATCAACTTGCCCGTAGTATTGGCCGCAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACAGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCTGCTCGAGGGCTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCACTGGAATTGAGGACTATGTACACCGTATTGGAAGAACAGGAAGAGCAGGTGCCACTGGTGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCGGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCAGAGTTAAGGCAGTTGGCTTTGCGTGGGCCACCAAATTTTGGAAAGGACCGGGCTGGAATGAGCAGGTTTGACTCTGGTGGAGGTGGTGGTGGGCGCTGGGAGTCTGGTGGTCGTGGTGGTGTGAGGGATGGTGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGAGCTGGTGGGCAAGGAGGGAGAGGTGATTTCTTTTCTGGTAGGGGCAATAGGGGTCGGGGATTTGGTGGCCCACGTGGGGGTCATGTTGGTTGGGGTCAGGGTGAACGTGGTCCCAATGATCGGTACAATATGGATGGGCGTGGACAAGGGCGTGGGCGTGGACGTGGACGATTTGACAATAGAAGAGATGTTGGTTACAGAAGTAGAGGCAGAAGTTACAGTGGTAGCCCTGAAAGAGTTAGAACATGGGATTATAGCAGCAGGAGTCGCAGTAGAAGCCGCAGCAGGAGTAGAAGTAGGAGCTGGAGCAGGGGTCGTAGCCGAAGTCGCAGCTGGTCTCGTGGCCGTAGTCGCAGCTATAGCCGTAGTATTAGTCCGCGTCGGAGCCGCAGCCGTAGCCGTGGCCGCAGCAGTCGAAGTTATAGCCGCAGCCCAAGCCGAAGCCGAAGCCGTAGCCACAGCTATGATAGGCATGATAGGTCAGATCAACAGGTTTCTGATAAGAAGGATCTTAGGGCACCTGAAGCAGGAGCTTCTGATACAAAAATGTTTCCTGTGTCTCCCAGCACTCAAGGGCATTCATCTTTGGGAACTGAACATGTGGAGCAGCAACCTGTTGTTGGGAGTACTGGCCCAGATAATCCAGAGGTTGCAGTAGACCTTAGTCATCAACCAGCTTCTGATATTTGA | 2034 | 0.4882 | MALHSNFTLCDLGFVAYWLRLLCLFCLFLLPQVASIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQEEVFKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQLALRGPPNFGKDRAGMSRFDSGGGGGGRWESGGRGGVRDGGFGGRGGMRDGAGGQGGRGDFFSGRGNRGRGFGGPRGGHVGWGQGERGPNDRYNMDGRGQGRGRGRGRFDNRRDVGYRSRGRSYSGSPERVRTWDYSSRSRSRSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISPRRSRSRSRGRSSRSYSRSPSRSRSRSHSYDRHDRSDQQVSDKKDLRAPEAGASDTKMFPVSPSTQGHSSLGTEHVEQQPVVGSTGPDNPEVAVDLSHQPASDI. | 678 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g04339 | 677 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 172 | 180 | IPR000629 | - | |
Seca5g04339 | 677 | MobiDBLite | consensus disorder prediction | 597 | 624 | - | - | |
Seca5g04339 | 677 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 255 | 399 | IPR001650 | - | |
Seca5g04339 | 677 | Gene3D | - | 231 | 401 | IPR027417 | - | |
Seca5g04339 | 677 | MobiDBLite | consensus disorder prediction | 403 | 677 | - | - | |
Seca5g04339 | 677 | FunFam | ATP-dependent RNA helicase RhlB | 230 | 402 | - | - | |
Seca5g04339 | 677 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 52 | 226 | IPR014001 | - | |
Seca5g04339 | 677 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 38 | 399 | - | - | |
Seca5g04339 | 677 | SMART | ultradead3 | 40 | 243 | IPR014001 | - | |
Seca5g04339 | 677 | CDD | SF2_C_DEAD | 240 | 369 | - | - | |
Seca5g04339 | 677 | Pfam | DEAD/DEAH box helicase | 45 | 215 | IPR011545 | GO:0003676|GO:0005524 | |
Seca5g04339 | 677 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 92 | 375 | IPR027417 | - | |
Seca5g04339 | 677 | SMART | helicmild6 | 276 | 360 | IPR001650 | - | |
Seca5g04339 | 677 | MobiDBLite | consensus disorder prediction | 631 | 658 | - | - | |
Seca5g04339 | 677 | Pfam | Helicase conserved C-terminal domain | 252 | 360 | IPR001650 | - | |
Seca5g04339 | 677 | MobiDBLite | consensus disorder prediction | 488 | 516 | - | - | |
Seca5g04339 | 677 | MobiDBLite | consensus disorder prediction | 540 | 585 | - | - | |
Seca5g04339 | 677 | Gene3D | - | 30 | 230 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g04339 | Seca-Chr5 | 100824037 | 100828582 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g04339 | 36 | 380 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 34.393 | 2.12e-63 | 214 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g04339 | K12823 | - | gmx:100806371 | 822.772 |