LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g04339	ATGGCCCTTCATTCAAATTTCACCTTATGTGACCTGGGATTTGTTGCTTATTGGCTCCGCCTCTTATGTCTTTTTTGCCTTTTTTTATTGCCTCAAGTTGCTTCAATATATTCTGCTGGCTTCTCGAACCCCACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATCGTGGCGATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTAATGCCTGCATTCATTCTTCTTAGACAGCGACGTAATAATCCTCTGAATGGCCCAACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGGACGGTCTTCACGAGTCTCTTGCACGTGTTTGTATGGTGGAGCACCTAAAGCCCTTCAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTCAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCGCGTAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCCGGCGATCTTCTTGTCAATCCCGTTCAGGTTAACATTGGAAGTGTAGATGAGCTCGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGACGTTTGGAGCAGATCCTCAGATCTCAAGAACGAGGTTCTAAGATCATAATATTTTGTTCCACAAAGAGATTATGTGATCAACTTGCCCGTAGTATTGGCCGCAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACAGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCTGCTCGAGGGCTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCACTGGAATTGAGGACTATGTACACCGTATTGGAAGAACAGGAAGAGCAGGTGCCACTGGTGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCGGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCAGAGTTAAGGCAGTTGGCTTTGCGTGGGCCACCAAATTTTGGAAAGGACCGGGCTGGAATGAGCAGGTTTGACTCTGGTGGAGGTGGTGGTGGGCGCTGGGAGTCTGGTGGTCGTGGTGGTGTGAGGGATGGTGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGAGCTGGTGGGCAAGGAGGGAGAGGTGATTTCTTTTCTGGTAGGGGCAATAGGGGTCGGGGATTTGGTGGCCCACGTGGGGGTCATGTTGGTTGGGGTCAGGGTGAACGTGGTCCCAATGATCGGTACAATATGGATGGGCGTGGACAAGGGCGTGGGCGTGGACGTGGACGATTTGACAATAGAAGAGATGTTGGTTACAGAAGTAGAGGCAGAAGTTACAGTGGTAGCCCTGAAAGAGTTAGAACATGGGATTATAGCAGCAGGAGTCGCAGTAGAAGCCGCAGCAGGAGTAGAAGTAGGAGCTGGAGCAGGGGTCGTAGCCGAAGTCGCAGCTGGTCTCGTGGCCGTAGTCGCAGCTATAGCCGTAGTATTAGTCCGCGTCGGAGCCGCAGCCGTAGCCGTGGCCGCAGCAGTCGAAGTTATAGCCGCAGCCCAAGCCGAAGCCGAAGCCGTAGCCACAGCTATGATAGGCATGATAGGTCAGATCAACAGGTTTCTGATAAGAAGGATCTTAGGGCACCTGAAGCAGGAGCTTCTGATACAAAAATGTTTCCTGTGTCTCCCAGCACTCAAGGGCATTCATCTTTGGGAACTGAACATGTGGAGCAGCAACCTGTTGTTGGGAGTACTGGCCCAGATAATCCAGAGGTTGCAGTAGACCTTAGTCATCAACCAGCTTCTGATATTTGA	2034	0.4882	MALHSNFTLCDLGFVAYWLRLLCLFCLFLLPQVASIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQEEVFKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQLALRGPPNFGKDRAGMSRFDSGGGGGGRWESGGRGGVRDGGFGGRGGMRDGAGGQGGRGDFFSGRGNRGRGFGGPRGGHVGWGQGERGPNDRYNMDGRGQGRGRGRGRFDNRRDVGYRSRGRSYSGSPERVRTWDYSSRSRSRSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISPRRSRSRSRGRSSRSYSRSPSRSRSRSHSYDRHDRSDQQVSDKKDLRAPEAGASDTKMFPVSPSTQGHSSLGTEHVEQQPVVGSTGPDNPEVAVDLSHQPASDI.	678

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g04339	677	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	172	180	IPR000629	-
	Seca5g04339	677	MobiDBLite	consensus disorder prediction	597	624	-	-
	Seca5g04339	677	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	255	399	IPR001650	-
	Seca5g04339	677	Gene3D	-	231	401	IPR027417	-
	Seca5g04339	677	MobiDBLite	consensus disorder prediction	403	677	-	-
	Seca5g04339	677	FunFam	ATP-dependent RNA helicase RhlB	230	402	-	-
	Seca5g04339	677	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	52	226	IPR014001	-
	Seca5g04339	677	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	38	399	-	-
	Seca5g04339	677	SMART	ultradead3	40	243	IPR014001	-
	Seca5g04339	677	CDD	SF2_C_DEAD	240	369	-	-
	Seca5g04339	677	Pfam	DEAD/DEAH box helicase	45	215	IPR011545	GO:0003676\|GO:0005524
	Seca5g04339	677	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	92	375	IPR027417	-
	Seca5g04339	677	SMART	helicmild6	276	360	IPR001650	-
	Seca5g04339	677	MobiDBLite	consensus disorder prediction	631	658	-	-
	Seca5g04339	677	Pfam	Helicase conserved C-terminal domain	252	360	IPR001650	-
	Seca5g04339	677	MobiDBLite	consensus disorder prediction	488	516	-	-
	Seca5g04339	677	MobiDBLite	consensus disorder prediction	540	585	-	-
	Seca5g04339	677	Gene3D	-	30	230	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g04339	Seca-Chr5	100824037	100828582	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g04339	36	380	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.393	2.12e-63	214

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g04339	K12823		-	gmx:100806371	822.772