Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04339 ATGGCCCTTCATTCAAATTTCACCTTATGTGACCTGGGATTTGTTGCTTATTGGCTCCGCCTCTTATGTCTTTTTTGCCTTTTTTTATTGCCTCAAGTTGCTTCAATATATTCTGCTGGCTTCTCGAACCCCACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATCGTGGCGATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTAATGCCTGCATTCATTCTTCTTAGACAGCGACGTAATAATCCTCTGAATGGCCCAACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGGACGGTCTTCACGAGTCTCTTGCACGTGTTTGTATGGTGGAGCACCTAAAGCCCTTCAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTCAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCGCGTAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCCGGCGATCTTCTTGTCAATCCCGTTCAGGTTAACATTGGAAGTGTAGATGAGCTCGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGACGTTTGGAGCAGATCCTCAGATCTCAAGAACGAGGTTCTAAGATCATAATATTTTGTTCCACAAAGAGATTATGTGATCAACTTGCCCGTAGTATTGGCCGCAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACAGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCTGCTCGAGGGCTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCACTGGAATTGAGGACTATGTACACCGTATTGGAAGAACAGGAAGAGCAGGTGCCACTGGTGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCGGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCAGAGTTAAGGCAGTTGGCTTTGCGTGGGCCACCAAATTTTGGAAAGGACCGGGCTGGAATGAGCAGGTTTGACTCTGGTGGAGGTGGTGGTGGGCGCTGGGAGTCTGGTGGTCGTGGTGGTGTGAGGGATGGTGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGAGCTGGTGGGCAAGGAGGGAGAGGTGATTTCTTTTCTGGTAGGGGCAATAGGGGTCGGGGATTTGGTGGCCCACGTGGGGGTCATGTTGGTTGGGGTCAGGGTGAACGTGGTCCCAATGATCGGTACAATATGGATGGGCGTGGACAAGGGCGTGGGCGTGGACGTGGACGATTTGACAATAGAAGAGATGTTGGTTACAGAAGTAGAGGCAGAAGTTACAGTGGTAGCCCTGAAAGAGTTAGAACATGGGATTATAGCAGCAGGAGTCGCAGTAGAAGCCGCAGCAGGAGTAGAAGTAGGAGCTGGAGCAGGGGTCGTAGCCGAAGTCGCAGCTGGTCTCGTGGCCGTAGTCGCAGCTATAGCCGTAGTATTAGTCCGCGTCGGAGCCGCAGCCGTAGCCGTGGCCGCAGCAGTCGAAGTTATAGCCGCAGCCCAAGCCGAAGCCGAAGCCGTAGCCACAGCTATGATAGGCATGATAGGTCAGATCAACAGGTTTCTGATAAGAAGGATCTTAGGGCACCTGAAGCAGGAGCTTCTGATACAAAAATGTTTCCTGTGTCTCCCAGCACTCAAGGGCATTCATCTTTGGGAACTGAACATGTGGAGCAGCAACCTGTTGTTGGGAGTACTGGCCCAGATAATCCAGAGGTTGCAGTAGACCTTAGTCATCAACCAGCTTCTGATATTTGA 2034 0.4882 MALHSNFTLCDLGFVAYWLRLLCLFCLFLLPQVASIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQEEVFKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQLALRGPPNFGKDRAGMSRFDSGGGGGGRWESGGRGGVRDGGFGGRGGMRDGAGGQGGRGDFFSGRGNRGRGFGGPRGGHVGWGQGERGPNDRYNMDGRGQGRGRGRGRFDNRRDVGYRSRGRSYSGSPERVRTWDYSSRSRSRSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISPRRSRSRSRGRSSRSYSRSPSRSRSRSHSYDRHDRSDQQVSDKKDLRAPEAGASDTKMFPVSPSTQGHSSLGTEHVEQQPVVGSTGPDNPEVAVDLSHQPASDI. 678
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04339 677 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 172 180 IPR000629 -
Seca5g04339 677 MobiDBLite consensus disorder prediction 597 624 - -
Seca5g04339 677 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 255 399 IPR001650 -
Seca5g04339 677 Gene3D - 231 401 IPR027417 -
Seca5g04339 677 MobiDBLite consensus disorder prediction 403 677 - -
Seca5g04339 677 FunFam ATP-dependent RNA helicase RhlB 230 402 - -
Seca5g04339 677 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 226 IPR014001 -
Seca5g04339 677 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 38 399 - -
Seca5g04339 677 SMART ultradead3 40 243 IPR014001 -
Seca5g04339 677 CDD SF2_C_DEAD 240 369 - -
Seca5g04339 677 Pfam DEAD/DEAH box helicase 45 215 IPR011545 GO:0003676|GO:0005524
Seca5g04339 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 375 IPR027417 -
Seca5g04339 677 SMART helicmild6 276 360 IPR001650 -
Seca5g04339 677 MobiDBLite consensus disorder prediction 631 658 - -
Seca5g04339 677 Pfam Helicase conserved C-terminal domain 252 360 IPR001650 -
Seca5g04339 677 MobiDBLite consensus disorder prediction 488 516 - -
Seca5g04339 677 MobiDBLite consensus disorder prediction 540 585 - -
Seca5g04339 677 Gene3D - 30 230 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca5g04339 Seca-Chr5 100824037 100828582 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04339 36 380 Eukaryotic Initiation Factors Gene Family AT3G19760 34.393 2.12e-63 214
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04339 K12823 - gmx:100806371 822.772