Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04338 ATGGAAGAGACATTTGTTCCATTTCGTGGAATAAAAAATGATCTTAAAGGGAGATTGATGTGTTACAAGCAAGACTGGCTTGGTGGTCTCACGGCAGGCTTCAGGATATTAGCCCCTACGACATATATATTTTTTGCATCAGCAATTCCAGTTATTTCATTTGGAGAACAATTGGAAAGAGATACAGGTACATTACTTCTTGTTACTCACATGCCATATATAAGTTTCATGGATGGAATACTCACCGCAGTGCAAACATTAGCATCCACTGCATTGTGTGGAATTATACACTCTATTATGGGAGGCCAGCCTTTGTTGATTCTTGGGGTAGCAGAACCAACTGTAATTATGTATACTTTCATGTTCAACTTTGCGAAAAACAGACCAGAATTGGGTTCAAAGCTTTTTCTAGCTTGGACAGGATGGGTATGCATATGGACTGCCATCTTGTTGTTCCTACTGGCTATCTTAGGAGCTTGCTCCATCATCAACCGGTTCACTCGCCTAGCAGGGGAACTGTTTGGCCTTCTTATTGCAATGCTCTTCATGCAAGAGGCTATTAGAGGACTCATTAATGAGTTTCATATACCTGAAAGAGCAGACATAACATCAACTGAGTTTCAATCTTCATGGAGATTTGGAAATGGCATGTTTGCTTTGATTCTGTCCTTTGGCCTTCTGCTTACAGGGTTGAGAAGCCGAAAAGCAAGGTCTTGGCGATATGGATCTGGATGTTTACGGGGCTTCATAGCAGATTATGGTGTCCCCTTGATGGTTCTATTATGGACTGCTATTTCTTATATACCAGCTGGAAGTATTCCTAAAGGAATCCCTAGGCGCCTATTCAGTCCAAATCCTTGGTCCCCTGGTGCATATGAAAACTGGACTGTCATAAAGGACATGCTGAATGTGCCAGTTCTCTATATTATTGGAGCATTTGTTCCAGCGACAATGATTGCTGTGCTTTATTATTTTGACCATAGTGTGGCATCTCAGCTTGCTCAGCAGAAAGAGTTCAATTTAAGAAAGCCATCTTCTTTCCATTATGATTTACTTCTTTTGGGATTCATGGTTATATTATGTGGTTTAATTGGAATTCCACCGTCAAATGGTGTCATTCCACAATCTCCAATGCATACCAAAAGTTTAGCTACATTGAAGCACCAGTTACTTAGGAACCGGCTTGTTGCAAAAGCTCGAAGTTGTATGGGAAAGCAAGAAAGCTTGGGACAAATTTATAGAAGTATGCAAGATGCTTACTGGCAGATGCAAACCCCTCTAATTCACCAGGAACCTTCCTCTCGGGGATTAAAAGAGTTGAAAGAGTCTACTATTCAGTTGGCATCAAACATGGAGAATATAAATACTCCAGTTGATGGGTCAATATTTGATGTTGAGAAGGAAATTGATGACTTATTGCCTGTTGAGGTTAAAGAACAACGAGTGAGCAACTTGCTTCAATCTTTGATGGTAGGAGGATGTGTAGCAGCAATGCCTTTCCTGAAAATGATTCCAACTTCTGTACTGTGGGGCTATTTTGCTTTCATGGCCATTGAAAGCTTACCTGGCAACCAGTTCTGGGAAAGGATTTTGTTAATGTTCACTGCTCCAAGCAGAAGATACAAAGTTCTGGAGGAGTGCCATGCAACTTATGTGGAAACAGTACCTTTCAAGACAATTGCAGTATTTACACTCTTCCAGACTGCTTACTTGCTGGTTTGTTTTGGTATCACTTGGGTTCCGATAGCTGGGGTTCTATTCCCATTGATGATCATGCTTCTAGTTCCAGTAAGACAATACATTTTGCCCAAGCTCTTCAAAGGAGCACACCTTCAAGATTTAGATGCTGCAGAATATGAGGAAGTCCCAGCTTTACCATTCGAGCTAGCTACTGAAGGGGACTTGAGTAGGACAGCTTCCTTTGCAGATGATGGAGAGATTCTAGATGGATTTGTTACTAGAAGCCGGGGTGAGGTTCGACGAGTTTGCAGTCCAAAGGTGATGAGCTCCACTGCAACCCCATCCAAAGAGTTAACAGGTCTTCAAAGTCCAAGGTTCCCAGATAAAGTATACAGCCCTAGGGTAAACCAACTAAGAGGAAATAACAGCCCTCGAGGTGTTGGGAGAGGACCATTTAGCCCTGGAGAAGCAAAGCCATCTAATTTGAGGAAATGTGGTTGA 2181 0.4191 MEETFVPFRGIKNDLKGRLMCYKQDWLGGLTAGFRILAPTTYIFFASAIPVISFGEQLERDTGTLLLVTHMPYISFMDGILTAVQTLASTALCGIIHSIMGGQPLLILGVAEPTVIMYTFMFNFAKNRPELGSKLFLAWTGWVCIWTAILLFLLAILGACSIINRFTRLAGELFGLLIAMLFMQEAIRGLINEFHIPERADITSTEFQSSWRFGNGMFALILSFGLLLTGLRSRKARSWRYGSGCLRGFIADYGVPLMVLLWTAISYIPAGSIPKGIPRRLFSPNPWSPGAYENWTVIKDMLNVPVLYIIGAFVPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSFHYDLLLLGFMVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNRLVAKARSCMGKQESLGQIYRSMQDAYWQMQTPLIHQEPSSRGLKELKESTIQLASNMENINTPVDGSIFDVEKEIDDLLPVEVKEQRVSNLLQSLMVGGCVAAMPFLKMIPTSVLWGYFAFMAIESLPGNQFWERILLMFTAPSRRYKVLEECHATYVETVPFKTIAVFTLFQTAYLLVCFGITWVPIAGVLFPLMIMLLVPVRQYILPKLFKGAHLQDLDAAEYEEVPALPFELATEGDLSRTASFADDGEILDGFVTRSRGEVRRVCSPKVMSSTATPSKELTGLQSPRFPDKVYSPRVNQLRGNNSPRGVGRGPFSPGEAKPSNLRKCG. 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04338 726 MobiDBLite consensus disorder prediction 666 680 - -
Seca5g04338 726 Pfam HCO3- transporter family 475 565 IPR011531 GO:0006820|GO:0016020
Seca5g04338 726 Pfam HCO3- transporter family 7 195 IPR011531 GO:0006820|GO:0016020
Seca5g04338 726 Pfam HCO3- transporter family 216 388 IPR011531 GO:0006820|GO:0016020
Seca5g04338 726 PANTHER ANION EXCHANGE PROTEIN 2 623 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca5g04338 726 MobiDBLite consensus disorder prediction 665 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04338 Seca-Chr5 100809165 100815141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04338 1 710 Antiporters AT3G62270 75.527 0.0 1107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04338 K24194 - gmx:100795777 1288.48