Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04333 ATGGTGGTGGAAGCGGAAATAATCTGTCAGCAGAGGATTCCGGTGTTGGACGTCAAGTATCACCTTTGTGTGGCGCAAGAACACGGAGTCAAGGTTGAGGTTTCACCAACCTCCAATGCCGTTCCGATCTTTAGCCAAGTGCGGGTTTCCTCTGAATCGATCTCTGTCGAAACGTCGTGCTTTGAATCGGCTGTGAGTTGCTCTGAGATGATTACAGATTCCATTTTAGAGACTCCTGCTACCAAGTTCACCCCGAATGTTCGTTCTGGTAGCTGGGCTGATATTGGACCCAGGGGATCAATGGATGATGAACACATTCAAATAGATGATCTAGCTGCCCACCTTGGATTTGTGTTCAAATACCCTATACCAAGTGCGTTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGAAGAATGCTATGAGATTATTTTTTGAAGATGCTAATATGCTGCAATCATATGATACCGATGCACTTTTTCTAAAGAGGTTGGAAGATTCACATCGGAGAGCTTTTCTAGGGGCAGACCTTGCCTTGGCCGATGAACAAAGTGTTAATAGTTCCTGTGGGACAACAGCATTGACTGCCCTTATACTTGGAAGGCATTTGCTGGTGGCTAATGCCGGTGATTGTCGAGCAGTACTTTGTAAGCGAGGAGTAGCTGTTGATATGTCTCAAGATCACAGGCCAAGTTATTTACCAGAACGCAGGAGAGTGGAGGAGTTGGGTGGTTTCATTGATGATGGGTATCTAAATGGTTATCTTTCTGTCACTCGTGCCCTTGGGGATTGGGACTTGAAATTTCCACTTGGTTCTGCATCACCTCTTATTGCTGAGCCAGATGTTCAAGTAGTCACATTGACTGAGGATGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTGATGTCAAGCCAGGATGCAGTTAGTCTTGTCCGGCGTGGGTTAAGGAGGCATAATGACCCACAACAATGTGCCAGAGAGCTAGTCAAGGAAGCATTGCGCCTACACACGTCTGATAATCTTACTGTGATTGTTATTTGCTTGTCCTCTGTCGAAAGCATTGTTGAATCATGTCCACCCCAAAGGCGAAGATTCAGAGCTTGCTCTCTATCTGAAGAGGCCCGAAACAGATTGAGAAGCTTGCTAGAGGGAAACTGA 1188 0.4588 MVVEAEIICQQRIPVLDVKYHLCVAQEHGVKVEVSPTSNAVPIFSQVRVSSESISVETSCFESAVSCSEMITDSILETPATKFTPNVRSGSWADIGPRGSMDDEHIQIDDLAAHLGFVFKYPIPSAFYAVFDGHGGPDAAAFVKKNAMRLFFEDANMLQSYDTDALFLKRLEDSHRRAFLGADLALADEQSVNSSCGTTALTALILGRHLLVANAGDCRAVLCKRGVAVDMSQDHRPSYLPERRRVEELGGFIDDGYLNGYLSVTRALGDWDLKFPLGSASPLIAEPDVQVVTLTEDDEFLIIGCDGIWDVMSSQDAVSLVRRGLRRHNDPQQCARELVKEALRLHTSDNLTVIVICLSSVESIVESCPPQRRRFRACSLSEEARNRLRSLLEGN. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04333 395 SMART PP2C_SIG_2 103 358 IPR001932 -
Seca5g04333 395 Pfam Protein phosphatase 2C 98 350 IPR001932 -
Seca5g04333 395 SUPERFAMILY PP2C-like 82 359 IPR036457 -
Seca5g04333 395 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Seca5g04333 395 SMART PP2C_4 78 356 IPR001932 -
Seca5g04333 395 Gene3D - 74 363 IPR036457 -
Seca5g04333 395 ProSiteProfiles PPM-type phosphatase domain profile. 88 358 IPR001932 -
Seca5g04333 395 CDD PP2Cc 87 358 IPR001932 -
Seca5g04333 395 FunFam Probable protein phosphatase 2C 22 72 361 - -
Seca5g04333 395 PANTHER PROTEIN PHOSPHATASE 2C 78 356 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04333 Seca-Chr5 100766454 100768790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04333 1 394 PP2C-type Phosphatase Gene Family AT1G48040 57.855 7.11e-153 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Seca5g04333 PP2C 1.6e-64 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04333 K14803 - gmx:100798957 700.664