Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04327 ATGGAAGTGAAAGGAAGTGTAAGCAATTCCAACACCACCAACACCATGATCCAAAGCGAGGATGATATGGACCTCCGAAGAGGCCCATGGACCGTCGATGAGGATCTTGCCCTTATCAATTACATTGCCAATCACGGTGAAGGTCGCTGGAACTCCCTTGCCCGTTCTGCTGGACTCAAACGAACTGGCAAGAGCTGCAGATTGAGATGGTTGAATTATCTCCGTCCAGATGTTCGACGTGGCAACATCACACTCGAAGAACAGCTTCTTATTCTTGAACTCCATACTCGCTGGGGAAACCGATGGTCCAAAATTGCTCAATATTTACCCGGAAGAACTGATAATGAGATTAAGAATTATTGGAGAACTCGTGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTTAAGGATGCCATGCGCTACCTCTGGATGCCAAGGCTGGTGGAGCGCATTCAAGCCGCCGCAGCCGCCACGGCCACCGCCACCAATGGTTCTCCAACCTTATCTCCTAGTGCCACCACAACCGTCACCACAAACAATACCACATACAATTACAACAACAACAACAATTTTGAGGTTCAAAGTGGGAACATGGTGTTACCTCCGGCAATTATGAACAACAACTTTGGCGGTTCAAATGTTACACAAAGTTATACTCCTGAGAATAGTAGCAGTGGCACAGTGGCATCATCAGACTCATTTGGGACACAAGTCTCACCTGTCTCGGACTTGACTCAAGATTATTACAATGTTGTTGTTGGTAATAACAACAACCCTAATCCTGATTACTATCAACAAGCACATCAACTTGGGTTCTTAGATTGCATCACTAGCCCCTCTGGGTTGTTCTCTCAGGAGATGGATTTCCAATCCATGGAACCAAACACCCAATGGATGCAGAGTGGGGACAATTCCGACAATTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAACTCAGTGACAACATGTGA 993 0.4562 MEVKGSVSNSNTTNTMIQSEDDMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAATATATNGSPTLSPSATTTVTTNNTTYNYNNNNNFEVQSGNMVLPPAIMNNNFGGSNVTQSYTPENSSSGTVASSDSFGTQVSPVSDLTQDYYNVVVGNNNNPNPDYYQQAHQLGFLDCITSPSGLFSQEMDFQSMEPNTQWMQSGDNSDNFWNVENMLLFQQLSDNM. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04327 330 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Seca5g04327 330 FunFam Myb transcription factor 27 79 - -
Seca5g04327 330 Gene3D - 84 147 - -
Seca5g04327 330 MobiDBLite consensus disorder prediction 166 187 - -
Seca5g04327 330 Gene3D - 24 80 - -
Seca5g04327 330 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Seca5g04327 330 FunFam MYB transcription factor 84 147 - -
Seca5g04327 330 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Seca5g04327 330 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Seca5g04327 330 SMART sant 26 76 IPR001005 -
Seca5g04327 330 SMART sant 79 127 IPR001005 -
Seca5g04327 330 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 199 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca5g04327 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 78 IPR017930 -
Seca5g04327 330 CDD SANT 100 123 IPR001005 -
Seca5g04327 330 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Seca5g04327 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
Seca5g04327 330 MobiDBLite consensus disorder prediction 223 244 - -
Seca5g04327 330 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04327 Seca-Chr5 100660599 100662895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04327 20 317 MYB Transcription Factor Family AT3G06490 53.797 4.52e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g04327 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04327 K09422 - gmx:100305347 492.271